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BioLiP
>protein
EFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKWDES

The query sequence (length=43) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ki9:A 43 43 1.0000 1.0000 1.0000 1.27e-26
2 1qzu:A 160 17 0.1860 0.0500 0.4706 2.1 1qzu:B, 1qzu:C, 1qzu:D
3 3l2p:A 535 15 0.1628 0.0131 0.4667 4.9
4 1e20:A 185 15 0.1628 0.0378 0.4667 8.9 1mvl:A, 1mvn:A
5 3q9t:A 577 12 0.1860 0.0139 0.6667 9.9 3q9t:B, 3q9t:C, 5zu2:A, 5zu2:B, 5zu2:C, 5zu3:A, 5zu3:B, 5zu3:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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