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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EFEGRWRVIPHDVLPDWLKDNDFLLHGHRPPMPSFRACFKSIFRIHTETGNIWTHLLGCVFFLCLGIFYMFRPNISFVAP
LQEKVVFGLFFLGAILCLSFSWLFHTVYCHSEGVSRLFSKLDYSGIALLIMGSFVPWLYYSFYCNPQPCFIYLIVICVLG
IAAIIVSQWDMFATPQYRGVRAGVFLGLGLSGIIPTLHYVISEGFLKAATIGQIGWLMLMASLYITGAALYAARIPERFF
PGKCDIWFHSHQLFHIFVVAGAFVHFHGVSNLQEFRFMIGGGCSEE

The query sequence (length=286) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ks1:A 286 286 1.0000 1.0000 1.0000 0.0 5lwy:A, 5lx9:A, 5lxa:A, 6yx9:A, 6yxd:A, 6yxf:A, 6yxg:A
2 6ks0:A 286 284 0.7937 0.7937 0.7993 6.98e-170 6krz:A, 6krz:B, 6krz:C, 5lxg:A
3 7d8u:A 284 34 0.0490 0.0493 0.4118 1.3 7d8u:B
4 2owq:B 224 30 0.0420 0.0536 0.4000 1.7 8j86:B, 8j8f:B, 8j8g:B, 4lzb:A, 4lzb:B, 4lzb:C, 4lzb:D, 4lzb:E, 4lzb:F, 4lzb:G, 4lzb:H, 4lzb:I, 4lzb:J, 4lzb:K, 4lzb:L, 2owq:A, 4qcb:B, 4qcb:A, 8wpe:C, 8wpf:C, 8wpk:C, 8wpp:C, 4ygm:B, 4ygm:A, 4yig:A, 4yig:E, 4yig:I
5 5fbs:A 787 53 0.0734 0.0267 0.3962 3.7
6 5fbt:A 769 53 0.0734 0.0273 0.3962 4.3
7 5hv1:A 847 53 0.0734 0.0248 0.3962 5.1 5hv3:A
8 5fbu:A 733 53 0.0734 0.0286 0.3962 6.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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