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BioLiP
>protein
EEYVVEKILGKRFVNGRPQVLVKWSGFPNENNTWEPLENVGNCMKLVSDFESEVFRLH

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4u68:A 64 57 0.9828 0.8906 1.0000 5.05e-38 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
2 7vrf:A 61 55 0.5862 0.5574 0.6182 1.32e-24 7vrf:B
3 2rvn:A 83 48 0.4310 0.3012 0.5208 1.17e-12
4 3tzd:A 58 49 0.4138 0.4138 0.4898 5.49e-12 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
5 6v41:AAA 61 51 0.3966 0.3770 0.4510 1.04e-10
6 6asz:A 53 52 0.3793 0.4151 0.4231 3.03e-10 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
7 8uxq:A 170 46 0.3966 0.1353 0.5000 3.65e-10 3fdt:A
8 7n27:A 57 49 0.3448 0.3509 0.4082 1.25e-09 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
9 1guw:A 73 42 0.3448 0.2740 0.4762 1.91e-09 6d07:A, 6d07:B, 6d08:A, 6d08:B
10 7vyw:A 47 38 0.3448 0.4255 0.5263 1.11e-08
11 5eq0:A 55 49 0.3276 0.3455 0.3878 6.29e-08 3i91:A
12 3gv6:A 56 51 0.3276 0.3393 0.3725 1.27e-07 3i90:A, 3i90:B
13 5epk:A 54 38 0.2931 0.3148 0.4474 3.25e-07 3h91:A, 3h91:B
14 5epl:B 58 46 0.3448 0.3448 0.4348 5.67e-07 5epl:A
15 5ejw:A 80 49 0.3448 0.2500 0.4082 2.37e-06 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
16 4fsx:A 680 57 0.3103 0.0265 0.3158 7.20e-06 4fsx:B, 4ft2:B, 4ft2:A
17 3qo2:A 61 52 0.2586 0.2459 0.2885 7.46e-06 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
18 6v2d:G 64 49 0.2759 0.2500 0.3265 8.11e-06 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
19 7ubu:A 708 57 0.3103 0.0254 0.3158 4.45e-05 4ft4:A, 4ft4:B
20 1pfb:A 55 50 0.3276 0.3455 0.3800 5.31e-05 1pdq:A
21 2rsn:A 75 39 0.2931 0.2267 0.4359 4.88e-04 3g7l:A
22 5e4w:C 105 46 0.2759 0.1524 0.3478 0.016 5e4w:D, 5e4x:A
23 7ef1:A 148 44 0.2931 0.1149 0.3864 0.076 7eez:A, 7ef0:A, 7ef0:B, 7ef1:B, 7ef2:A, 7ef2:B, 7ef3:A, 7ef3:B
24 8rv0:Y 495 43 0.2586 0.0303 0.3488 0.16 8rvm:YYY, 8rxu:AAA, 8rxu:MMM, 8rxu:YYY
25 2b2w:A 177 25 0.1897 0.0621 0.4400 0.29 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
26 3ggg:D 293 24 0.2241 0.0444 0.5417 0.54 2g5c:A, 2g5c:B, 2g5c:C, 2g5c:D, 3ggg:A, 3ggg:B, 3ggg:C, 3ggo:A, 3ggo:B, 3ggo:D, 3ggo:C, 3ggp:A, 3ggp:B, 3ggp:D, 3ggp:C
27 4liq:E 469 22 0.1724 0.0213 0.4545 0.97
28 6g0l:M 855 28 0.1724 0.0117 0.3571 1.0 7nkx:W, 5o9g:W
29 9gd1:W 849 28 0.1724 0.0118 0.3571 1.2
30 6ftx:W 878 28 0.1724 0.0114 0.3571 1.2 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
31 7tn2:W 895 28 0.1724 0.0112 0.3571 1.2 9gd2:W, 9gd3:W
32 1xmz:B 231 40 0.2414 0.0606 0.3500 2.6 1xmz:A
33 6s47:Bi 952 32 0.1724 0.0105 0.3125 6.5
34 4iup:B 134 33 0.2069 0.0896 0.3636 6.8 4iup:A, 4iuq:B, 4iuq:A, 4iur:B, 4iur:A, 4iut:B, 4iut:A, 4iuu:B, 4iuu:A, 4iuv:A, 4iuv:B
35 8ova:Bb 144 23 0.1552 0.0625 0.3913 7.0 8ove:Bb, 5t5h:b, 4v8m:Bb
36 6guu:B 204 36 0.2069 0.0588 0.3333 7.0 6guu:A
37 5a31:A 1441 33 0.1379 0.0056 0.2424 8.8 5g04:A, 4ui9:A
38 1mpx:A 614 31 0.2586 0.0244 0.4839 9.5 1mpx:B, 1mpx:C, 1mpx:D
39 8qhe:A 284 49 0.2759 0.0563 0.3265 9.7 6sle:A, 6sle:C, 6sle:H, 6sle:D, 6sle:E, 6sle:F, 6sle:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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