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BioLiP
>protein
EERLHYQVGQRALIQAMQISAMPELVEAVQKRDLARIKALIDPMRSFSDATYITVGDASGQRLYHVNPDEIGKSMEGGDS
DEALINAKSYVSVRKGSLGSSLRGKSPIQDATGKVIGIVSVGYTIEQLEHH

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1p0z:A 131 131 1.0000 1.0000 1.0000 1.33e-93 2j80:A, 2j80:B, 1p0z:B, 1p0z:C, 1p0z:D, 1p0z:E, 1p0z:F, 1p0z:G, 1p0z:H, 1p0z:I, 1p0z:J
2 4onx:F 129 109 0.2519 0.2558 0.3028 2.80e-09 4onx:A, 4onx:C, 4onx:B, 4onx:D, 4onx:E
3 8w5z:A 333 46 0.1374 0.0541 0.3913 0.79 8w5z:C
4 2f9y:B 257 48 0.1145 0.0584 0.3125 1.2
5 5xnp:A 361 53 0.0992 0.0360 0.2453 4.8 5xnp:B, 5xnq:A
6 7xql:A 444 37 0.1069 0.0315 0.3784 6.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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