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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EEPPNFQPPAKCHVVTKSRDFAEWPIMKASEAIQRYIYALSTTERAACKPGKSSESHAAWFAATGVSNHGYSHVQGLNLI
FDHTLGRYDGVLKKVQLRNEKARARLESINASRADEGLPEIKAEEEEVATNETGHLLQPPGINPSFYVYQTISPQAYRPR
DEIVLPPEYAGYVRDPNAPIPLGVVRNRCDIQKGCPGYIPEWQREAGTAISPKTGKAVTVPGLSPKKNKRMRRYWRSEKE
KAQDALLVTVRIGTDWVVIDVRGLLRNARWRTIAPKDISLNALLDLFTGDPVIDVRRNIVTFTYTLDACGTYARKWTLKG
KQTKATLDKLTATQTVALVAIDLGQTNPISAGISRVTQENGALQCEPLDRFTLPDDLLKDISAYRIAWDRNEEELRARSV
EALPEAQQAEVRALDGVSKETARTQLCADFGLDPKRLPWDKMSSNTTFISEALLSNSVSRDQVFFTPAPVEVMRKDRTWA
RAYKPRLSVEAQKLKNEALWALKRTSPEYLKLSRRKEELCRRSINYVIEKTRRRTQCQIVIPVIEDLNVRFFHGSGKRLP
GWDNFFTAKKENRWFIQGLHKAFSDLRTHRSFYVFEVRPERTSITCPKCGHCEVGNRDGEAFQCLSCGKTCNADLDVATH
NLTQVALTGKTMPKR

The query sequence (length=655) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7lyt:A 712 664 1.0000 0.9199 0.9864 0.0 7lys:A, 7m5o:A
2 7odf:A 703 678 0.3985 0.3713 0.3850 4.00e-152
3 8iew:A 498 614 0.3710 0.4880 0.3958 2.70e-126 8inb:A
4 8j12:A 424 46 0.0305 0.0472 0.4348 1.96e-05 8dzj:A, 8dzj:B, 8j1j:A, 8j3r:A, 7wju:A, 7wju:B
5 8hr5:A 466 60 0.0351 0.0494 0.3833 4.10e-05
6 8j1j:B 387 46 0.0290 0.0491 0.4130 0.008 8j12:B, 8j3r:B
7 7c7l:B 372 52 0.0275 0.0484 0.3462 3.3
8 6bsl:A 201 56 0.0275 0.0896 0.3214 4.1 6bsl:B, 6bsm:A, 6btn:A, 6btn:B, 6bto:A, 6bto:B, 6btp:A, 6btp:B, 6btq:A, 6btq:B, 3edg:A, 3edh:A
9 4s28:A 520 48 0.0260 0.0327 0.3542 4.8 4n7q:A, 4s25:A, 4s26:A, 4s26:B, 4s27:A, 4s29:A
10 1qyp:A 57 39 0.0229 0.2632 0.3846 5.2
11 7l48:A 522 58 0.0305 0.0383 0.3448 6.0 7c7l:A, 7l48:B, 7l49:A, 7l49:B
12 1ji5:A 142 60 0.0260 0.1197 0.2833 8.0 1ji5:B, 1ji5:C, 1ji5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218