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BioLiP
>protein
EEACELPECQEDAGNKVCSLQCNNHACGWDGGDCS

The query sequence (length=35) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1pb5:A 35 35 1.0000 1.0000 1.0000 9.32e-20
2 7abv:A 232 33 0.8857 0.1336 0.9394 2.97e-16 3eto:A, 3eto:B, 3i08:A, 3i08:C, 3l95:X, 3l95:Y
3 4zlp:A 241 32 0.4571 0.0664 0.5000 5.85e-05 5czv:A, 5czx:A, 5czx:B, 6xsw:C, 6xsw:F, 6xsw:J, 6xsw:X, 4zlp:B
4 4zlp:A 241 27 0.3143 0.0456 0.4074 0.66 5czv:A, 5czx:A, 5czx:B, 6xsw:C, 6xsw:F, 6xsw:J, 6xsw:X, 4zlp:B
5 2oo4:A 226 27 0.4571 0.0708 0.5926 1.87e-04 2oo4:B
6 2oo4:A 226 27 0.3143 0.0487 0.4074 1.1 2oo4:B
7 4gz8:A 557 33 0.3429 0.0215 0.3636 1.2 4gz8:B
8 6otf:B 521 17 0.2571 0.0173 0.5294 2.2 6otf:A, 6otf:C, 6ouc:A
9 8hgg:C 1484 28 0.2857 0.0067 0.3571 3.1 8hgg:D, 8hgh:A, 8hgh:B
10 8hgg:C 1484 26 0.2857 0.0067 0.3846 5.5 8hgg:D, 8hgh:A, 8hgh:B
11 8hgg:C 1484 21 0.2857 0.0067 0.4762 5.8 8hgg:D, 8hgh:A, 8hgh:B
12 8a7e:C 1524 28 0.2857 0.0066 0.3571 3.1 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
13 8a7e:C 1524 26 0.2857 0.0066 0.3846 5.4 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
14 8a7e:C 1524 21 0.2857 0.0066 0.4762 5.6 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
15 5xtg:B 233 29 0.3143 0.0472 0.3793 5.1
16 5z34:A 361 15 0.2286 0.0222 0.5333 6.0
17 8a7d:Q 273 26 0.2857 0.0366 0.3846 7.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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