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BioLiP
>protein
EDQKLSDFHADMGGCESCHADGSPSADGAYEFEQCQSCHGSLAEMDAVHKPHDGALMCADCHAPHDMNVGQKPTCDSCHD
DGRTSDSVLK

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hr0:A 90 90 1.0000 1.0000 1.0000 1.13e-61
2 6ee7:A 91 89 0.8444 0.8352 0.8539 1.77e-52 1m1p:A, 1m1p:B, 1m1p:C, 1m1p:D, 1m1p:E, 1m1p:F, 1m1q:A, 1m1r:A
3 2k3v:A 86 84 0.7333 0.7674 0.7857 1.81e-46
4 1d4c:A 570 90 0.4000 0.0632 0.4000 3.93e-13 1d4c:C, 1d4c:B, 1d4c:D, 1d4d:A, 1d4e:A
5 1qo8:A 564 82 0.3667 0.0585 0.4024 7.83e-09 1qo8:D
6 2b7r:A 568 88 0.3889 0.0616 0.3977 9.26e-08 2b7s:A, 1e39:A, 1jrx:A, 1jrx:B, 1jry:A, 1jry:B, 1jrz:A, 1jrz:B, 1kss:A, 1ksu:A, 1ksu:B, 1lj1:A, 1lj1:B, 1m64:A, 1m64:B, 1p2e:A, 1p2h:A, 1q9i:A, 1qjd:A, 1y0p:A
7 3vth:A 753 95 0.3000 0.0359 0.2842 0.012 3vth:B, 3vti:A, 3vti:B
8 2e84:A 513 66 0.2667 0.0468 0.3636 0.43
9 2e84:A 513 48 0.2000 0.0351 0.3750 2.4
10 1gws:A 503 81 0.2778 0.0497 0.3086 0.49 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
11 1gws:A 503 54 0.2222 0.0398 0.3704 1.6 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
12 3ux8:A 564 33 0.1333 0.0213 0.3636 0.62
13 3uwx:A 945 36 0.1333 0.0127 0.3333 0.70
14 2r6f:A 899 36 0.1333 0.0133 0.3333 0.71
15 2r6f:B 879 36 0.1333 0.0137 0.3333 0.79
16 9c3d:A 224 83 0.2222 0.0893 0.2410 0.89
17 1qn0:A 112 26 0.1556 0.1250 0.5385 0.91 1qn1:A, 1wad:A
18 7dxg:A 698 63 0.2111 0.0272 0.3016 1.4 7dxf:A, 7dxf:D, 7dxf:B, 7dxf:C, 7dxg:D, 7dxg:C, 7dxg:B
19 6btm:A 221 50 0.1556 0.0633 0.2800 1.5
20 7o7g:A 627 38 0.1778 0.0255 0.4211 1.6 4lm8:A, 8qbq:A, 8qbz:A, 8qc9:A, 7qth:A
21 6lod:A 218 29 0.1222 0.0505 0.3793 1.9 6loe:A
22 6c66:B 334 49 0.1667 0.0449 0.3061 7.8
23 6f0k:A 207 29 0.1111 0.0483 0.3448 8.0
24 6c66:C 367 49 0.1667 0.0409 0.3061 8.8 6c66:D, 6c66:E, 6c66:F, 5u07:E, 5u07:F, 5u07:G, 5u07:H, 5u0a:E, 5u0a:F, 5u0a:G, 5u0a:H
25 1gks:A 78 13 0.1000 0.1154 0.6923 9.1
26 7r1n:AAA 184 52 0.1333 0.0652 0.2308 9.5 7r1n:BBB, 7r1n:CCC, 7r1n:DDD

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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