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BioLiP
>protein
EDPEISLADYWKCTSCNEMNPPLPSHCNRCWALRENWLPEDK

The query sequence (length=42) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2c6a:A 46 42 1.0000 0.9130 1.0000 2.42e-26 2c6b:A, 4xxb:B
2 2cr8:A 53 32 0.3571 0.2830 0.4688 8.87e-07
3 3irb:A 137 31 0.2381 0.0730 0.3226 0.40 3irb:B
4 1nj3:A 31 25 0.2381 0.3226 0.4000 0.47 1q5w:A
5 5m60:A 755 33 0.2857 0.0159 0.3636 0.75
6 8hfc:A 276 18 0.2143 0.0326 0.5000 0.88
7 7yet:A 999 23 0.1905 0.0080 0.3478 1.8
8 8hf3:A 295 18 0.1905 0.0271 0.4444 1.9
9 7yes:A 1369 23 0.1905 0.0058 0.3478 2.2 8jsl:A, 8jsm:A, 8jsn:A, 7yer:A
10 2ayj:A 56 34 0.2619 0.1964 0.3235 2.7
11 3a9j:C 32 24 0.1905 0.2500 0.3333 4.1 9avt:C, 9avw:C, 7e62:C, 7e62:J, 2wwz:C, 2wx0:C, 2wx0:G, 2wx1:C
12 7ajt:UM 762 27 0.2857 0.0157 0.4444 4.5 7aju:UM, 7d4i:B3, 7d5s:B3, 7d5t:B3, 7d63:B3, 6ke6:B3, 6lqp:B3, 6lqq:B3, 6lqr:B3, 6lqs:B3, 6lqt:B3, 6lqu:B3, 6lqv:B3, 7suk:LR, 6zqa:UM, 6zqb:UM, 6zqc:UM, 6zqd:UM, 6zqf:UM
13 5wyj:BC 783 27 0.2857 0.0153 0.4444 5.7 5wyk:BC
14 2k1p:A 33 25 0.2381 0.3030 0.4000 5.7
15 2vr0:F 146 29 0.2857 0.0822 0.4138 7.7 2j7a:C, 2j7a:F, 2j7a:I, 2j7a:L, 2j7a:O, 2j7a:R, 2vr0:C
16 1qo8:A 564 29 0.2381 0.0177 0.3448 9.8 1qo8:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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