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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTS
DLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD
FVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQK
FVLSYPDVIALAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKL
KKLS

The query sequence (length=324) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3n6s:A 344 324 0.9969 0.9390 0.9969 0.0 5cky:O, 5co0:O, 5crj:O, 5crk:O, 3mva:O, 3mvb:O, 3n7q:A
2 1wdl:A 715 51 0.0432 0.0196 0.2745 0.23 2d3t:A, 2d3t:B, 1wdk:A, 1wdk:B, 1wdl:B, 1wdm:A, 1wdm:B
3 8pmj:A 1133 127 0.0833 0.0238 0.2126 1.1 8pmd:A
4 7dv5:U 1189 127 0.0833 0.0227 0.2126 1.2 7e1a:U
5 5a0y:E 442 64 0.0494 0.0362 0.2500 1.5 5a0y:B, 5a8k:B, 5a8k:E, 7b2h:B, 7b2h:E, 5g0r:E, 5g0r:B, 1hbm:B, 1hbm:E, 1hbn:B, 1hbn:E, 1hbo:B, 1hbo:E, 1hbu:B, 1hbu:E, 3m1v:E, 3m1v:B, 3m2r:E, 3m2r:B, 3m2u:E, 3m2u:B, 3m2v:E, 3m2v:B, 3m30:E, 3m30:B, 3m32:B, 3m32:E, 1mro:E, 1mro:B, 3pot:E, 3pot:B, 7suc:b, 7suc:B, 7sxm:E, 7sxm:B
6 1jl3:A 137 64 0.0556 0.1314 0.2812 2.5 1jl3:B, 1jl3:C, 1jl3:D
7 4iug:A 957 50 0.0494 0.0167 0.3200 4.1
8 6z1p:BY 327 137 0.0988 0.0979 0.2336 5.0
9 2zjs:Y 415 109 0.0895 0.0699 0.2661 5.0
10 1wkk:A 137 46 0.0494 0.1168 0.3478 5.8 1wkl:A, 1wkl:B
11 8pm6:A 872 128 0.0833 0.0310 0.2109 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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