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BioLiP
>protein
EDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQ
KADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSRKPLPPPSDYFNALSP
KSSRVDVWHTVYNHPMKDADSIVEWVKGTGLRPYLAAAGEENREAFLADYTRRIAAAYPPMADGRLLLRFPRLFVVAVKK

The query sequence (length=240) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2p35:A 245 240 0.9917 0.9714 0.9917 1.26e-176 2p35:B
2 5f8f:B 361 125 0.1500 0.0997 0.2880 6.85e-06 5f8e:A, 5f8e:B, 5f8f:A, 5f8f:C
3 3bxo:A 236 97 0.1042 0.1059 0.2577 6.71e-05 3bxo:B
4 5dm0:B 272 94 0.0917 0.0809 0.2340 6.55e-04 5dly:A, 5dm0:A, 4kvz:A
5 6gkv:A 351 174 0.1625 0.1111 0.2241 6.56e-04 6gkv:B, 6gky:A, 6gky:B, 6gkz:A, 6gkz:B, 6gkz:C, 6gkz:D
6 5dm2:A 258 93 0.0917 0.0853 0.2366 0.002 5dm1:A, 5dm4:A, 4kwc:A
7 4ine:A 431 100 0.1083 0.0603 0.2600 0.002 4ine:B
8 3jwg:A 195 54 0.0917 0.1128 0.4074 0.004
9 1im8:A 225 106 0.1208 0.1289 0.2736 0.008 1im8:B
10 5wp4:A 485 128 0.1417 0.0701 0.2656 0.011
11 1ve3:B 226 103 0.1167 0.1239 0.2718 0.014 1ve3:A
12 6uv6:C 264 115 0.1333 0.1212 0.2783 0.014 6uv6:A, 6uv6:B
13 3jwh:A 191 52 0.0875 0.1099 0.4038 0.025 3jwh:B
14 5wp5:A 463 114 0.1167 0.0605 0.2456 0.037 5wp5:B
15 4qtu:B 191 96 0.1208 0.1518 0.3021 0.047 4qtu:D
16 6f5z:B 228 59 0.0792 0.0833 0.3220 0.055 6f5z:A
17 6uak:A 297 146 0.1375 0.1111 0.2260 0.10
18 3e8s:A 220 162 0.1917 0.2091 0.2840 0.17
19 5kok:A 348 98 0.0958 0.0661 0.2347 0.20 5koc:A, 5koc:B, 5kok:B, 5kpc:A, 5kpc:B, 5kpg:A, 5kpg:B
20 3lcc:A 216 87 0.0958 0.1065 0.2644 0.28
21 8joz:A 257 101 0.1208 0.1128 0.2871 0.28 4htf:A, 4htf:B
22 1xtp:A 246 93 0.1125 0.1098 0.2903 0.32
23 5m58:A 230 87 0.1083 0.1130 0.2989 0.38 5m58:B
24 3dtn:A 220 64 0.0750 0.0818 0.2812 0.42 3dtn:B
25 3sxj:A 245 72 0.1042 0.1020 0.3472 0.55 3sxj:B, 3t0i:A, 3t0i:B
26 3ou7:A 214 97 0.1125 0.1262 0.2784 0.57 3ou2:A, 3ou6:A, 3ou6:B, 3ou6:C, 3ou6:D, 3ou7:B, 3ou7:C, 3ou7:D
27 5mgz:A 230 152 0.1583 0.1652 0.2500 0.64 5mgz:B
28 1p91:A 268 48 0.0625 0.0560 0.3125 0.64 1p91:B
29 3uj7:A 259 86 0.0875 0.0811 0.2442 0.76 4fgz:A, 4fgz:B, 4r6w:A, 4r6w:B, 4r6x:A, 4r6x:B, 3uj6:A, 3uj7:B, 3uj8:A, 3uj9:A, 3uja:A, 3ujb:A, 3ujb:B, 3ujc:A, 3ujd:A
30 5u1e:A 321 108 0.1250 0.0935 0.2778 1.2 5tyq:A, 5u0n:A, 5u0t:A, 5u18:A, 5u19:A, 5u1i:A, 5u4t:A
31 1ylh:A 524 90 0.1125 0.0515 0.3000 1.2
32 7wtt:q 235 127 0.1292 0.1319 0.2441 1.4 6g4w:q, 7wts:q, 7wtu:q, 7wtv:q, 7wtw:q
33 6ecx:A 283 146 0.1417 0.1201 0.2329 2.7 6ect:A
34 5knn:A 450 44 0.0750 0.0400 0.4091 2.9 5knn:B, 5knn:C, 5knn:D, 5knn:E, 5knn:F, 5knn:G, 5knn:H, 5v59:A, 4xem:A, 4xeo:A, 4xeo:B
35 7cje:C 289 49 0.0833 0.0692 0.4082 3.4 7cje:A, 7cjg:A, 7cjg:B, 6qql:A, 6qql:B
36 2aaa:A 476 96 0.1042 0.0525 0.2604 3.6
37 2okc:B 426 70 0.0833 0.0469 0.2857 4.1 2okc:A
38 3c37:A 223 79 0.0792 0.0852 0.2405 4.9 3c37:B
39 3ofk:A 204 97 0.1000 0.1176 0.2474 5.0 3ofk:B, 3ofk:C, 3ofk:D
40 7lxi:A 279 54 0.0708 0.0609 0.3148 6.8 7mcj:A, 7mcj:B
41 2plw:A 182 122 0.1250 0.1648 0.2459 6.9
42 7o0t:A 354 71 0.0792 0.0537 0.2676 7.2 7o0t:B, 7o0t:C, 7o0t:D
43 5fad:A 160 52 0.0625 0.0938 0.2885 7.3 5fa8:A
44 1l1e:A 272 35 0.0500 0.0441 0.3429 7.8 1l1e:B
45 4xcx:A 216 39 0.0542 0.0602 0.3333 8.7 5wy0:A
46 6h5o:A 598 45 0.0542 0.0217 0.2889 9.0
47 3c46:A 1095 64 0.0917 0.0201 0.3438 9.1 3c2p:A, 3c2p:B, 3c3l:A, 3c3l:B, 3c46:B, 4ff1:A, 4ff1:B, 4ff2:A, 4ff2:B, 4ff3:A, 4ff3:B, 4ff4:A, 4ff4:B, 3q0a:A, 3q0a:B, 3q22:A, 3q22:B, 3q23:A, 3q23:B, 3q24:A, 3q24:B
48 5egp:A 282 109 0.1208 0.1028 0.2661 9.1 5egp:B, 5jgk:A, 5jgk:B, 5jgl:A, 5jgl:B
49 8h1b:B 193 43 0.0583 0.0725 0.3256 9.2 8h1b:A, 8h26:A, 8h26:B, 8h26:C, 8h26:D, 8h27:B
50 1tw2:B 350 47 0.0708 0.0486 0.3617 9.7 5eeg:A, 5eeg:B, 5eeh:A, 5eeh:B, 5eeh:C, 5jr3:A, 5jr3:B, 5jr3:C, 7owb:A, 7oy1:A, 7oy1:B, 7pga:A, 7pga:B, 7pga:C, 7pga:D, 7pgj:A, 7phd:A, 7phd:B, 7phe:A, 7phe:B, 7phf:A, 7phf:D, 7phf:C, 1tw2:A, 1tw3:A, 1tw3:B, 4wxh:A, 4wxh:B
51 6dcb:A 225 39 0.0458 0.0489 0.2821 9.8 6dcc:A, 5una:C, 5una:A, 5una:B, 5una:D, 5una:E, 5una:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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