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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EAEFLTVKSTKQWTIGTDVQGSERLNGVSYQEDALITYGDYQYVTFYETAPAGYLNHFVKVGRRRVSPSVGDWEFLTLDD
YTQKTMDGHNMISMGISGDGKIHLSFDHFDVPINYRISKNGIAKDVPSKWTSDLFDPVVHELVGSQGPYSPLTYPRFEPL
GNGDLLLEFRIGQSGSGDSYIHRYSASTGKWQAYGMYIQGDDNNAYINGLDYLDGKLYTSWTVRETPNADTNHGVYFAYS
NDDGKTWFNTNDTKLTKPISTSDDSTLIWDIPQNSRMVNQEGQLIDTKGRFHILMRDLLSGEHQYQHYLRKADGTWTKNA
INPAGLNGPDLYDPRGKLAGDASGEYLFGILPDPVKQSTGIYVATASKDFKDWKSLAEIPNTSTEPLFDKTRLHESGILS
VFVRQAGGFPDRKLQVWDFELDLLEQKLISEEDLN

The query sequence (length=435) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7esn:A 435 435 1.0000 1.0000 1.0000 0.0 7esk:A, 7esm:A, 8i4d:A, 7yqs:A
2 5mul:A 378 267 0.1977 0.2275 0.3221 6.74e-29
3 6jq9:B 483 229 0.1517 0.1366 0.2882 8.38e-09 6byp:A, 6byp:B, 6byt:A, 6byt:B, 6byx:A, 6byx:B, 6jq9:A
4 7czh:A 481 293 0.1747 0.1580 0.2594 3.13e-08 7czh:B, 7drq:A, 7drq:B
5 5hc2:A 343 68 0.0322 0.0408 0.2059 4.6 5hc0:A, 5hc2:B, 5hc2:C, 5hc2:D, 5hc3:B, 5hc3:D, 5hc4:A
6 8oh5:C 1172 54 0.0391 0.0145 0.3148 6.4 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
7 4mc7:A 363 113 0.0644 0.0771 0.2478 6.9 4k3y:A, 4k3y:B, 4k3y:C, 4k3y:D, 4mc7:B, 4mc7:C, 4mc7:D
8 1f3r:B 257 17 0.0299 0.0506 0.7647 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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