Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DWKDIPVPADAGPNMKWEFQEISDNFEYEAPADNKGSEFLEKWDDFYHNAWAGPGLTEWKRDRSYVADGELKMWATRKPG
SDKINMGCITSKTRVVYPVYIEARAKVMNSTLASDVWLLSADDTQEIDILDAYGADYSESAGKDHSYFSKKVHISHHVFI
RDPFQDYQPKDAGSWFEDGTVWNKEFHRFGVYWRDPWHLEYYIDGVLVRTVSGKDIIDPKHFTNTTDPGNTEIDTRTGLN
KEMDIIINTEDQTWRSSPASGLQSNTYTPTDNELSNIENNTFGVDWIRIYKPVEK

The query sequence (length=295) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4atf:C 297 295 1.0000 0.9933 1.0000 0.0 4atf:A, 4atf:B, 4atf:D
2 1o4y:A 270 296 0.4203 0.4593 0.4189 2.38e-74 1urx:A
3 4asm:B 357 367 0.4847 0.4006 0.3896 1.02e-69
4 6aii:A 330 328 0.4203 0.3758 0.3780 5.04e-65
5 7fgz:A 260 293 0.3288 0.3731 0.3311 4.15e-49
6 3ilf:A 257 300 0.2441 0.2802 0.2400 7.82e-13 4ate:A
7 6hy3:A 269 304 0.2644 0.2900 0.2566 5.22e-12
8 4awd:A 297 243 0.1864 0.1852 0.2263 0.003 4awd:B
9 3n91:A 315 55 0.0644 0.0603 0.3455 0.40
10 8ep4:A 265 177 0.1525 0.1698 0.2542 0.81 8ep4:B, 8ep4:C, 8ew1:A, 8ew1:B, 8ew1:C
11 1qf6:A 641 81 0.0644 0.0296 0.2346 5.1 7cbg:A, 7cbg:B, 7cbh:A, 7cbh:B, 7cbi:A, 7cbi:B, 1evk:A, 1evk:B, 1evl:A, 1evl:B, 1evl:C, 1evl:D, 1fyf:A, 1fyf:B, 8h98:B, 8h98:A, 8h99:A, 8h99:B, 8h9a:A, 8h9b:A, 8h9c:A, 4hwo:A, 4hwo:B, 4hwp:A, 4hwp:B, 4hwr:A, 4hwr:B, 4hws:A, 4hws:B, 1kog:A, 1kog:B, 1kog:C, 1kog:D, 1kog:E, 1kog:F, 1kog:G, 1kog:H, 6l2p:A, 6l2p:B, 6l2q:A, 6l2q:B, 8ou8:D, 8ou8:A, 4p3o:A, 4p3o:B, 4p3p:A, 4p3p:B, 8qic:A, 8qic:D, 1tke:A, 1tkg:A, 1tky:A, 8wia:A, 8wia:B, 8wig:A, 8wig:B, 8wih:A, 8wih:B, 8wii:A, 8wii:B, 8wij:B, 8wij:A, 7wm7:A, 7wm7:B, 7wmf:A, 7wmf:B, 7wmi:A, 7wmi:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218