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BioLiP
>protein
DVLTVSTVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK
YGMN

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ds9:B 98 90 1.0000 0.8571 0.9333 6.40e-55 5ds9:A, 5dtd:A, 5dtd:B, 5e3l:A, 5e3l:B, 5e3m:A, 5e3m:B, 5e3n:A, 5e3n:B, 5e3o:A, 5e3o:B, 1fip:A, 1fip:B, 4ihv:A, 4ihv:B, 4ihw:A, 4ihw:B, 4ihx:A, 4ihx:B, 4ihy:A, 4ihy:B, 3iv5:A, 3iv5:B, 3jr9:A, 3jr9:B, 3jra:A, 3jra:B, 3jrb:A, 3jrb:B, 3jrc:A, 3jrc:B, 3jrd:A, 3jrd:B, 3jre:A, 3jre:B, 3jrf:A, 3jrf:B, 3jrg:A, 3jrg:B, 3jrh:A, 3jrh:B, 3jri:A, 3jri:B, 6p0s:A, 6p0s:B, 6p0t:B, 6p0t:A, 6p0u:A, 6p0u:B
2 1ojl:E 285 40 0.1905 0.0561 0.4000 0.018
3 1wow:A 245 72 0.2381 0.0816 0.2778 5.9 1wov:A, 1wov:B, 1wow:B, 1wox:A, 1wox:B
4 2ynm:C 417 45 0.1905 0.0384 0.3556 6.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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