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BioLiP
>protein
DVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENKAK

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3qo2:A 61 58 0.9667 0.9508 1.0000 2.70e-37 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
2 7n27:A 57 54 0.4667 0.4912 0.5185 1.53e-14 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
3 6v41:AAA 61 55 0.4333 0.4262 0.4727 2.72e-13
4 6v2d:G 64 51 0.4667 0.4375 0.5490 1.09e-12 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
5 3tzd:A 58 48 0.4167 0.4310 0.5208 6.78e-11 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
6 2rvn:A 83 51 0.4000 0.2892 0.4706 1.93e-10
7 8uxq:A 170 49 0.4000 0.1412 0.4898 5.37e-10 3fdt:A
8 6asz:A 53 48 0.3500 0.3962 0.4375 6.40e-10 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
9 5epk:A 54 53 0.3667 0.4074 0.4151 1.79e-08 3h91:A, 3h91:B
10 1guw:A 73 42 0.3333 0.2740 0.4762 4.12e-08 6d07:A, 6d07:B, 6d08:A, 6d08:B
11 5ejw:A 80 47 0.3500 0.2625 0.4468 1.45e-07 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
12 1pfb:A 55 41 0.2833 0.3091 0.4146 1.94e-07 1pdq:A
13 4fsx:A 680 54 0.3500 0.0309 0.3889 4.85e-07 4fsx:B, 4ft2:B, 4ft2:A
14 7ubu:A 708 54 0.3500 0.0297 0.3889 5.91e-07 4ft4:A, 4ft4:B
15 5epl:B 58 52 0.3167 0.3276 0.3654 1.87e-06 5epl:A
16 5eq0:A 55 43 0.2667 0.2909 0.3721 2.60e-06 3i91:A
17 3gv6:A 56 43 0.2667 0.2857 0.3721 5.11e-06 3i90:A, 3i90:B
18 4u68:A 64 52 0.2500 0.2344 0.2885 5.42e-06 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
19 7vyw:A 47 44 0.2500 0.3191 0.3409 2.01e-05
20 2rsn:A 75 41 0.3333 0.2667 0.4878 3.39e-05 3g7l:A
21 7vrf:A 61 54 0.2500 0.2459 0.2778 6.43e-04 7vrf:B
22 2b2w:A 177 24 0.1667 0.0565 0.4167 0.42 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
23 6ie0:B 347 29 0.2167 0.0375 0.4483 1.6 6ie0:C, 6ie0:D
24 5hjq:A 284 53 0.2833 0.0599 0.3208 2.0
25 5ft8:A 401 23 0.1333 0.0200 0.3478 5.3 5ft4:A, 5ft4:B, 5ft5:A, 5ft5:B, 5ft6:A, 5ft6:B, 5ft8:C, 5ft8:E, 5ft8:G, 5ft8:I, 5ft8:K, 5ft8:M, 5ft8:O, 4lw2:A, 4lw2:B, 4lw2:C, 4lw4:A, 4lw4:B
26 8du0:A 286 9 0.1167 0.0245 0.7778 8.6 7ll6:A
27 8po7:A 594 23 0.1833 0.0185 0.4783 8.9
28 3q6s:B 67 48 0.1833 0.1642 0.2292 9.0 3q6s:A, 3q6s:C, 3q6s:D, 5t1g:A
29 3qvq:A 251 52 0.2167 0.0518 0.2500 9.7 3qvq:B, 3qvq:C, 3qvq:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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