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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFDDDAVAAVAYQVTNGKNAMPGFNGRLSPLQIEDVAAYV
VDQAEKGW

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1kib:A 89 88 0.9886 0.9775 0.9886 6.52e-60 1f1f:A, 1kib:B, 1kib:C, 1kib:D, 1kib:E, 1kib:F, 1kib:G, 1kib:H
2 1c6s:A 87 88 0.6136 0.6207 0.6136 2.05e-32 6tr1:A, 6tr1:C, 6tr1:E, 6tsy:A, 6tsy:B, 6tsy:C, 6tsy:D, 6tsy:E, 6tsy:F
3 4gyd:A 86 88 0.5795 0.5930 0.5795 7.67e-30 4gyd:B, 4gyd:C, 4gyd:D, 4gyd:E, 4gyd:F, 4h0j:A, 4h0j:B, 4h0j:C, 4h0j:D, 4h0j:E, 4h0j:F, 4h0k:A, 4h0k:B
4 2zbo:A 86 88 0.5455 0.5581 0.5455 4.15e-29 2zbo:C, 2zbo:E, 2zbo:G, 2zbo:I, 2zbo:K
5 3ph2:B 85 88 0.5795 0.6000 0.5795 9.90e-29 2v08:A, 2v08:B
6 3dmi:A 87 88 0.5568 0.5632 0.5568 2.60e-28
7 1gdv:A 85 88 0.5341 0.5529 0.5341 1.30e-26
8 7y5e:GN 84 88 0.5227 0.5476 0.5227 3.77e-26 7y5e:G2, 7y7a:G7, 7y7a:Go
9 1cyj:A 90 84 0.5114 0.5000 0.5357 1.31e-24 1cyi:A
10 3dr0:A 93 77 0.4886 0.4624 0.5584 2.82e-23 3dr0:B, 3dr0:C, 4eic:A, 4eid:A
11 1ls9:A 91 83 0.4773 0.4615 0.5060 4.07e-22
12 1a2s:A 89 85 0.4659 0.4607 0.4824 5.18e-22 1ced:A, 1ctj:A
13 1c6o:A 89 85 0.4659 0.4607 0.4824 1.84e-21 1c6o:B, 1c6r:A
14 4eie:A 82 84 0.3636 0.3902 0.3810 1.41e-14 4eif:A
15 2dge:A 102 101 0.3864 0.3333 0.3366 6.07e-10 2ce0:A, 2ce1:A, 2dge:C, 2dge:B, 2dge:D, 2v07:A
16 7o38:A 81 75 0.3068 0.3333 0.3600 1.53e-09
17 4kmg:A 88 85 0.3068 0.3068 0.3176 9.75e-09
18 6hwh:i 162 86 0.3409 0.1852 0.3488 8.37e-07 6hwh:j
19 6adq:C 223 86 0.3409 0.1345 0.3488 1.16e-06 6adq:O, 6hwh:M, 6hwh:K, 8ovc:O, 8ovc:C, 8ovd:O, 8ovd:C, 7rh5:O, 7rh5:I, 7rh6:O, 7rh6:I, 7rh7:O, 7rh7:I
20 4j20:A 88 87 0.2955 0.2955 0.2989 4.88e-04 4j20:B
21 3dp5:A 99 81 0.2614 0.2323 0.2840 0.001 3cu4:A, 5mcs:A, 6u97:A
22 7qhm:C 233 87 0.3068 0.1159 0.3103 0.003 7q21:C, 7q21:c, 7qhm:P, 7qho:C, 7qho:P
23 7o9u:A 153 84 0.2386 0.1373 0.2500 0.003
24 8gy2:B 433 100 0.3182 0.0647 0.2800 0.006
25 4lji:A 133 98 0.3068 0.2030 0.2755 0.019 4lji:B
26 8hn3:A 80 82 0.2614 0.2875 0.2805 0.036 8hn3:B
27 6xkw:p 254 81 0.3068 0.1063 0.3333 0.044 6xkx:p, 6xkz:p
28 6xkw:p 254 77 0.2614 0.0906 0.2987 4.1 6xkx:p, 6xkz:p
29 3oa8:B 180 89 0.3295 0.1611 0.3258 0.050 3oa8:D, 3oa8:F, 3ocd:B, 3ocd:D
30 8snh:G 304 85 0.2614 0.0757 0.2706 0.073
31 7e1w:O 223 81 0.2727 0.1076 0.2963 0.076 7e1v:O, 7e1v:C, 7e1w:C, 7e1x:O, 7e1x:C, 8hcr:C, 8hcr:O
32 5djq:C 303 81 0.2386 0.0693 0.2593 0.11 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
33 6jlu:V 137 19 0.1136 0.0730 0.5263 0.26 8iwh:V, 8iwh:v, 6j3y:V, 6j3y:v, 6j3z:V, 6j3z:v, 6j40:V, 6j40:v, 8j5k:V, 8j5k:v, 6jlu:v, 7vd5:V, 7vd5:v
34 2xts:D 204 17 0.1136 0.0490 0.5882 0.46 2xts:B
35 1e29:A 135 32 0.1250 0.0815 0.3438 0.56 7n8o:V, 7n8o:v, 7rcv:V, 7rcv:v, 8tow:V, 8tow:v
36 1kv9:A 664 83 0.2159 0.0286 0.2289 0.67
37 6r6m:B 100 34 0.1364 0.1200 0.3529 0.73 6r6n:B, 6r6o:B
38 1cyc:A 103 30 0.1364 0.1165 0.4000 1.3 1cyc:B, 3cyt:O, 3cyt:I, 5cyt:R, 1i54:A, 1i54:B, 1i55:A, 1i55:B, 1lfm:A, 1lfm:B
39 1kb0:A 670 87 0.2727 0.0358 0.2759 1.3
40 4yuu:V1 129 16 0.0795 0.0543 0.4375 1.3 4yuu:v1, 4yuu:V2, 4yuu:v2
41 1gks:A 78 67 0.2159 0.2436 0.2836 1.4
42 6zm5:U 133 30 0.1364 0.0902 0.4000 1.5
43 2zoo:A 438 31 0.1591 0.0320 0.4516 1.6
44 7w2j:C 418 96 0.2955 0.0622 0.2708 1.7 8jej:C, 8jek:C, 8k6j:C, 8k6k:C, 7w2j:F, 7wsq:C, 7wsq:F, 8xcm:C, 8xcn:C
45 8smr:G 312 17 0.1023 0.0288 0.5294 1.7
46 8smr:G 312 85 0.2159 0.0609 0.2235 5.5
47 7y5e:VL 134 19 0.1023 0.0672 0.4737 1.7 7y5e:V6, 7y5e:v6, 7y5e:vL, 7y7a:V9, 7y7a:v9, 7y7a:VE, 7y7a:vE, 7y7a:VO, 7y7a:vO, 7y7a:VZ, 7y7a:vZ, 7y7a:Vm, 7y7a:vm
48 7vzg:C 193 79 0.2386 0.1088 0.2658 1.8 7vzr:C
49 2yev:B 319 19 0.1136 0.0313 0.5263 1.8 2yev:E
50 8wql:VD 135 56 0.2045 0.1333 0.3214 1.9 1f1c:A, 1f1c:B, 8wql:VE, 8wql:V1, 8wql:v1, 8wql:vD, 8wql:vE
51 2l4d:A 106 98 0.2273 0.1887 0.2041 2.0
52 7a5h:U 152 30 0.1364 0.0789 0.4000 2.3 7a5f:U3, 7a5g:U3, 7a5i:U3, 7a5j:U, 7a5k:U3, 8any:U, 6i9r:U, 3j7y:U, 3j9m:U, 8k2a:LW, 8k2b:LW, 7l08:U, 7l20:U, 6nu2:U, 6nu3:U, 7o9k:U, 7o9m:U, 7odr:U, 7ods:U, 7odt:U, 7of0:U, 7of2:U, 7of3:U, 7of4:U, 7of5:U, 7of6:U, 7of7:U, 7og4:XU, 7oi6:U, 7oi7:U, 7oi8:U, 7oi9:U, 7oia:U, 7oib:U, 7oic:U, 7oid:U, 7oie:U, 8oir:BB, 8oit:BB, 5ool:U, 5oom:U, 7pd3:U, 8pk0:U, 7po4:U, 7qh6:U, 7qi4:U, 7qi5:U, 7qi6:U, 8qsj:U, 8qu1:U, 8qu5:U, 6vlz:U, 6vmi:U, 8xt0:LW, 8xt1:LW, 8xt2:LW, 8xt3:LW, 6zm6:U, 6zs9:XU, 6zsa:XU, 6zsb:XU, 6zsc:XU, 6zsd:XU, 6zse:XU, 6zsg:XU
53 1akk:A 104 30 0.1250 0.1058 0.3667 2.4 2b4z:A, 5c0z:A, 5c0z:D, 5c0z:B, 5c0z:C, 5c9m:A, 5c9m:D, 5c9m:B, 5c9m:C, 1crc:A, 1crc:B, 5df5:A, 5df5:B, 5df5:C, 5df5:D, 8dvx:A, 8dvx:D, 8dvx:B, 8dvx:C, 8dzl:A, 8dzl:B, 8dzl:C, 8dzl:D, 6ff5:A, 1fi7:A, 1fi9:A, 2frc:A, 1giw:A, 2giw:A, 1hrc:A, 1i5t:A, 5iy5:1, 5iy5:2, 3j2t:H, 3j2t:I, 3j2t:J, 3j2t:K, 3j2t:L, 3j2t:M, 3j2t:N, 3jbt:B, 3jbt:D, 3jbt:F, 3jbt:H, 3jbt:J, 3jbt:L, 3jbt:N, 5juy:H, 5juy:I, 5juy:J, 5juy:K, 5juy:L, 5juy:M, 5juy:N, 6k9i:A, 6k9j:A, 1lc1:A, 1lc2:A, 7ljx:A, 7ljx:B, 1m60:A, 6n1o:A, 6n1o:B, 6n1o:C, 6n1o:D, 2n3b:A, 3nbs:A, 3nbs:B, 3nbs:C, 3nbs:D, 3nbt:A, 3nbt:E, 3nbt:B, 3nbt:C, 3nbt:D, 3nbt:F, 4nfg:B, 3o1y:A, 3o1y:B, 3o1y:C, 3o20:A, 3o20:B, 3o20:C, 1ocd:A, 2pcb:B, 4rsz:A, 4rsz:B, 4rsz:C, 4rsz:D, 4rsz:E, 4rsz:F, 6suv:AaA, 6suv:BaB, 6suv:CaC, 6suv:DaD, 6suv:EaE, 6suv:FaF, 6suv:GaG, 6suv:HaH, 1u75:B, 3wc8:A, 1wej:F, 3wui:A, 5wve:B, 5wve:D, 5wve:F, 5wve:H, 5wve:J, 5wve:L, 5wve:N, 2ybb:Y, 5zkv:A
54 8xr6:V 137 19 0.0909 0.0584 0.4211 2.5 8wb4:V, 8wb4:v, 8xr6:v
55 7bhp:A 322 49 0.1705 0.0466 0.3061 3.0
56 3a0b:V 137 16 0.0909 0.0584 0.5000 3.4 3a0b:v, 3a0h:V, 3a0h:v, 2axt:V, 2axt:v, 5b5e:V, 5b5e:v, 5b66:V, 5b66:v, 7cji:V, 7cji:v, 7cjj:V, 7cjj:v, 7cou:V, 7cou:v, 7d1t:V, 7d1t:v, 7d1u:V, 7d1u:v, 6dhe:V, 6dhe:v, 6dhf:V, 6dhf:v, 6dhg:V, 6dhg:v, 6dhh:V, 6dhh:v, 6dho:V, 6dho:v, 6dhp:V, 6dhp:v, 5e79:V, 5e79:v, 5e7c:V, 5e7c:v, 7eda:V, 9evx:V, 9evx:v, 8ez5:V, 8ez5:v, 8f4c:V, 8f4c:v, 8f4d:V, 8f4d:v, 8f4e:V, 8f4e:v, 8f4f:V, 8f4f:v, 8f4g:V, 8f4g:v, 8f4h:V, 8f4h:v, 8f4i:V, 8f4i:v, 8f4j:V, 8f4j:v, 8f4k:V, 8f4k:v, 4fby:V, 4fby:i, 8gn0:V, 8gn0:v, 8gn1:V, 8gn1:v, 8gn2:V, 8gn2:v, 5gth:V, 5gth:v, 5gti:V, 5gti:v, 5h2f:V, 5h2f:v, 4il6:V, 4il6:v, 8ir5:V, 8ir5:v, 8ir6:V, 8ir6:v, 8ir7:V, 8ir7:v, 8ir8:V, 8ir8:v, 8ir9:V, 8ir9:v, 8ira:V, 8ira:v, 8irb:V, 8irb:v, 8irc:V, 8irc:v, 8ird:V, 8ird:v, 8ire:V, 8ire:v, 8irf:V, 8irf:v, 8irg:V, 8irg:v, 8irh:V, 8irh:v, 8iri:V, 8iri:v, 4ixq:V, 4ixq:v, 4ixr:V, 4ixr:v, 1izl:V, 1izl:0, 6jlj:V, 6jlj:v, 6jlk:V, 6jlk:v, 6jll:V, 6jll:v, 6jlm:V, 6jlm:v, 6jln:V, 6jln:v, 6jlo:V, 6jlo:v, 6jlp:V, 6jlp:v, 5kaf:V, 5kaf:v, 5kai:V, 5kai:v, 3kzi:V, 5mx2:V, 5mx2:v, 1mz4:A, 4pbu:V, 4pbu:v, 4pj0:V, 4pj0:v, 7rf1:V, 7rf1:v, 7rf2:V, 7rf2:v, 7rf3:V, 7rf3:v, 7rf4:V, 7rf4:v, 7rf5:V, 7rf5:v, 7rf6:V, 7rf6:v, 7rf7:V, 7rf7:v, 7rf8:V, 7rf8:v, 4rvy:V, 4rvy:v, 1s5l:V, 1s5l:v, 5tis:V, 5tis:v, 4tnh:V, 4tnh:v, 4tni:V, 4tni:v, 4tnj:V, 4tnj:v, 4tnk:V, 4tnk:v, 4ub6:V, 4ub6:v, 4ub8:V, 4ub8:v, 5v2c:V, 5v2c:v, 4v62:AV, 4v62:BV, 4v82:AV, 4v82:BV, 6w1o:V, 6w1o:v, 6w1p:V, 6w1p:v, 6w1q:V, 6w1q:v, 6w1r:V, 6w1r:v, 6w1t:V, 6w1t:v, 6w1u:V, 6w1u:v, 6w1v:V, 6w1v:v, 1w5c:T, 1w5c:V, 5ws5:V, 5ws5:v, 5ws6:V, 5ws6:v, 3wu2:V, 3wu2:v, 7yq2:V, 7yq2:v, 7yq7:V, 7yq7:v, 5zzn:V, 5zzn:v
57 2bv2:A 83 22 0.1023 0.1084 0.4091 3.6 2bv2:B
58 2aiu:A 104 30 0.1250 0.1058 0.3667 4.2
59 3cxh:W 112 102 0.3068 0.2411 0.2647 4.3 1yea:A, 1yeb:A, 1ytc:A
60 8jw0:a 645 52 0.1818 0.0248 0.3077 4.7
61 4d2w:D 326 32 0.1477 0.0399 0.4062 4.9 4bky:A, 4bkz:A, 4bl1:A, 4d2p:A, 4d2p:B, 4d2p:C, 4d2p:D, 4d2t:A, 4d2t:B, 4d2t:C, 4d2t:D, 4d2v:A, 4d2v:B, 4d2v:C, 4d2v:D, 4d2w:A, 4d2w:B, 4d2w:C, 6gvx:A, 6gvx:B, 5ih8:A, 5ih9:A, 5iha:A, 5ihc:A, 5k00:A, 5m5a:A, 5maf:A, 5mag:A, 5mah:A, 5mai:A, 5tvt:A, 5twl:A, 5twy:A, 5twy:B, 5twz:A, 4ump:A, 4ump:B, 4ump:C, 4ump:D, 4umq:A, 4umr:A, 4umt:A, 4umu:A, 6vxr:A
62 1a4i:B 295 26 0.1364 0.0407 0.4615 5.2 1a4i:A, 1dia:A, 1dia:B, 1dib:A, 1dib:B, 1dig:A, 1dig:B, 6ecp:A, 6ecp:B, 6ecq:A, 6ecq:B, 6ecr:A, 6ecr:B
63 4o1w:A 79 86 0.2955 0.3291 0.3023 5.3 4o1w:D, 4o1w:B, 4o1w:C, 4o1w:E, 4o1w:F
64 6dc9:L 215 30 0.1250 0.0512 0.3667 5.9 6dc9:M
65 7jpo:A 352 18 0.1136 0.0284 0.5556 6.6 7jpr:A, 7jps:A, 5uj7:A, 5uj7:B, 5ujm:A
66 5w5x:L 212 24 0.1250 0.0519 0.4583 6.7
67 7rja:D 244 50 0.1705 0.0615 0.3000 6.8 7rja:N, 7rjb:D, 7rjc:D, 7rjd:D, 7rje:D, 7rje:N
68 8eqm:V 131 36 0.1364 0.0916 0.3333 7.1 8eqm:v
69 2q83:A 332 26 0.1364 0.0361 0.4615 7.5 2q83:B
70 6ojt:B 481 13 0.1023 0.0187 0.6923 9.7 6ojr:A, 6ojt:A, 6ojw:B, 6ojw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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