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BioLiP
>protein
DTYYLQVRGRENFEILMKLKESLELMELVPQPLVDSYRQQQQLLQR

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2wtt:L 46 46 1.0000 1.0000 1.0000 5.26e-27 2wqj:K, 2wqj:Z, 2wtt:N, 2wtt:O, 2wtt:P
2 2wqj:C 32 28 0.6087 0.8750 1.0000 8.31e-14
3 4d1l:F 38 35 0.4130 0.5000 0.5429 4.52e-07 4cz5:C, 4cz6:D
4 7bwn:J 280 25 0.2609 0.0429 0.4800 0.13 7bwn:O, 7bwn:C, 7bwn:M, 4gf6:B, 4w74:A, 4w74:B, 4w74:H, 4w74:C, 4w74:D, 4w74:E, 4w76:A, 4w76:B, 4w77:A, 4w77:B, 4w7a:A, 4w7a:B, 4w7c:B, 4w7d:A, 4w7f:A, 4w7r:A, 4w7r:B, 4w7r:C, 4w7r:D
5 4mzr:A 234 25 0.2609 0.0513 0.4800 0.32 4mzr:B, 4mzr:C, 4mzr:D, 3q01:A, 3q01:B, 3q05:A, 3q05:C, 3q05:B, 3q05:D, 3q06:A, 3q06:C, 3q06:D, 3q06:B, 3ts8:A, 3ts8:B, 3ts8:C, 3ts8:D
6 8jbw:A 364 61 0.4130 0.0522 0.3115 0.72
7 8ka5:A 297 35 0.2826 0.0438 0.3714 1.3 8ka3:A, 8ka4:B, 8ka4:C
8 7pwd:A 621 42 0.3261 0.0242 0.3571 2.7 6c2y:A, 3cik:A, 5he1:A, 7k7l:A, 3krw:A, 3krx:A, 3pvu:A, 3pvw:A, 5ukk:A, 5wg3:A, 5wg5:A
9 3uzs:A 609 42 0.3261 0.0246 0.3571 3.6 3uzt:A
10 1rj5:A 259 32 0.3478 0.0618 0.5000 3.8 1rj5:B, 1rj6:A, 1rj6:B
11 1m1j:B 402 32 0.2609 0.0299 0.3750 3.9 1m1j:E
12 8cbj:l 286 34 0.1957 0.0315 0.2647 4.0 6eml:r, 6fai:l, 6rbd:l, 6y7c:l
13 2cd9:A 363 30 0.1957 0.0248 0.3000 5.6 2cd9:B, 2cda:A, 2cda:B, 2cdb:A, 2cdb:B, 2cdb:C, 2cdb:D, 2cdc:A, 2cdc:B, 2cdc:C, 2cdc:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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