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BioLiP
>protein
DTVIDEKINIPVPLGTVFSLLYGDDTSYIKKIIENQNNFNVCDIPKFVNNAREITYTKKLNNSFGPKQTKCIVTETIEHM
DLNSFFMVKQIVRSPDVPYGSSFSVHTRFFYSWGDHNTTNMKVVTNVVWTGKSMLKGTIEKGSIDGQRSSTKQLVDDLKK
IISN

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ys0:B 164 164 1.0000 1.0000 1.0000 2.33e-120 5ys0:A
2 6bym:A 200 169 0.5427 0.4450 0.5266 1.10e-61 6bym:B
3 6cay:A 165 157 0.4390 0.4364 0.4586 1.00e-46 6cay:B
4 7azn:A 177 149 0.2317 0.2147 0.2550 9.05e-05 8axw:A
5 6gqf:A 168 115 0.1707 0.1667 0.2435 0.008 6gqf:B, 6gqf:C, 6gqf:D
6 8ci5:A 1258 62 0.0915 0.0119 0.2419 0.47
7 7lld:A 446 80 0.1220 0.0448 0.2500 2.5 7lld:B, 7lle:A, 7lle:B
8 6czy:A 362 24 0.0732 0.0331 0.5000 6.1 6czy:B, 6czy:C, 6czy:D, 6czz:A, 6czz:B, 6czz:C, 6czz:D
9 3gqc:B 440 56 0.0915 0.0341 0.2679 7.1 3gqc:A, 3gqc:D, 3gqc:C
10 2uvh:A 404 37 0.0854 0.0347 0.3784 8.5 2uvi:A, 2uvj:A
11 5g09:D 473 22 0.0427 0.0148 0.3182 9.2 5g09:A, 5g09:B, 5g09:C, 5g0a:A, 5g0a:B, 5g0a:C, 5g0a:D, 5g2p:A, 5g2p:B, 5g2p:C, 5g2p:D, 5g2q:A, 5g2q:B, 5g2q:C, 5g2q:D, 5g2q:E, 5g2q:F, 5g2q:G, 5g2q:H, 5g2q:I, 5g2q:J, 5g2q:K, 5g2q:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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