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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DTAHGVGEIPMKTDLELDFSLPSSSSYSYRRKLTNPANKEESIPFHFQMEKQVIHAEIQPLGHWMDATFNIKTAFHCYGA
CQKYSYPWQTSKCFFEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSVGKAYKIISLKYTRKVCIQLGTEQTCKHI
DANDCLVTPSVKVCIVGTVSKLQPSDTLLFLGPLEQGGIILKQWCTTSCAFGDPGDIMSTPSGMRCPEHTGSFRKICGFA
TTPVCEYQGNTISGYKRMMATKDSFQSFNLTEPHITTNKLEWIDPDGNTRDFVNLVLNRDVSFQDLSDNPCKVDLHTQAI
EGAWGSGVGFTLTCTVGLTECPSFMTSIKACDLAMCYGSTVTNLARGSNTVKVVGKGGHSGSSFKCCHDTDCSSEGLLAS
ADKVYDDGAPPCTFKCW

The query sequence (length=417) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6y62:B 419 410 0.9185 0.9141 0.9341 0.0 6y5f:B, 6zjm:F, 6zjm:H, 6zjm:D, 6zjm:B
2 7qqb:B 423 412 0.7578 0.7470 0.7670 0.0
3 5ljz:A 410 402 0.6211 0.6317 0.6443 0.0 5lk1:A
4 5ljx:A 382 402 0.5755 0.6283 0.5970 4.81e-177 5lk2:A, 5lk3:A
5 1yqq:A 273 39 0.0312 0.0476 0.3333 7.3 1yqq:B, 1yqq:C, 1yqu:A, 1yqu:B, 1yqu:C, 1yr3:A, 1yr3:B, 1yr3:C, 1yr3:D, 1yr3:E, 1yr3:F
6 5aj4:Bh 289 29 0.0360 0.0519 0.5172 7.7 4ce4:h, 6gaw:Bh, 6gb2:Bh, 7nqh:Bh, 7nql:Bh, 7nsh:Bh, 7nsi:Bh, 7nsj:Bh, 8oin:Bt, 8oiq:Bt, 7qh7:c, 6ydp:Bh, 6ydw:Bh
7 1h30:A 391 139 0.0719 0.0767 0.2158 8.3 2c5d:A, 2c5d:B, 4ra0:A, 4ra0:B, 5vxz:A, 5vxz:B
8 7jw4:A 591 95 0.0600 0.0423 0.2632 9.1 7jw4:B, 7jwf:A, 7jwf:B, 7jwf:C, 7jwf:D
9 1yge:A 839 39 0.0408 0.0203 0.4359 9.7 3bnb:A, 3bnc:A, 3bnd:A, 3bne:A, 5eeo:A, 1f8n:A, 1fgm:A, 1fgo:A, 1fgq:A, 1fgr:A, 1fgt:A, 3pzw:A, 2sbl:B, 2sbl:A, 7soi:A, 7soi:B, 7soj:A, 7soj:B, 5t5v:A, 5t5v:B, 5tqn:A, 5tqn:B, 5tqo:A, 5tqo:B, 5tqp:A, 5tqp:B, 5tr0:A, 5tr0:B, 4wfo:A, 4wha:A, 1y4k:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218