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BioLiP
>protein
DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2od1:A 50 50 1.0000 1.0000 1.0000 5.84e-32 2odd:A
2 9de2:A 71 47 0.8600 0.6056 0.9149 4.79e-29
3 2dj8:A 60 42 0.8400 0.7000 1.0000 1.61e-26
4 4a24:A 47 42 0.4800 0.5106 0.5714 1.38e-13 2jw6:A
5 5ex0:A 429 33 0.2600 0.0303 0.3939 0.002 7bj1:A, 5ccl:A, 5ccm:A, 5ex3:A, 5hi7:A, 5hq8:A, 5hq8:B, 6ijl:A, 3mek:A, 7o2a:A, 7o2b:A, 7o2c:A, 6o9o:A, 8owo:A, 3oxf:A, 3oxf:B, 3oxg:A, 3oxl:A, 6p6g:A, 6p6k:A, 6p7z:A, 6paf:A, 3pdn:A, 7qlb:A, 7qnr:A, 7qnu:A, 3qwp:A, 3ru0:A, 3ru0:B, 5v37:A, 5xxd:A, 5xxg:A, 5xxj:A, 5yjo:A, 6yuh:A, 6zrb:A
6 2d8q:A 70 44 0.4000 0.2857 0.4545 0.012 2dan:A
7 2pzi:A 654 28 0.2200 0.0168 0.3929 0.030 2pzi:B, 7q52:AAA, 4y0x:A, 4y12:A
8 5v3h:A 438 26 0.2200 0.0251 0.4231 0.13 5arf:A, 5arg:A, 6cbx:A, 6cbx:B, 6cby:A, 6cby:B, 5kjk:A, 5kjl:A, 5kjm:A, 5kjn:A, 6mon:A, 6mon:B, 6n3g:A, 4o6f:A, 3qwv:A, 3qww:A, 3rib:A, 3rib:B, 3s7b:A, 3s7d:A, 3s7f:A, 3s7j:A, 3tg4:A, 3tg5:A, 5wcg:A, 4wuy:A, 4ynd:A
9 2xzl:A 756 36 0.2000 0.0132 0.2778 6.7
10 6ekc:B1 73 29 0.2200 0.1507 0.3793 7.1 6ekb:A, 6ekc:B2, 6ekc:B3, 6ekc:B4, 6ekc:B5, 6ekc:B6, 6ekc:B7, 6ekc:B8, 6ekc:D1, 6ekc:D2, 6ekc:D3, 6ekc:D4, 6ekc:D5, 6ekc:D6, 6ekc:D7, 6ekc:D8, 6ekc:F1, 6ekc:F2, 6ekc:F3, 6ekc:F4, 6ekc:F5, 6ekc:F6, 6ekc:F7, 6ekc:F8, 6ekc:H1, 6ekc:H2, 6ekc:H3, 6ekc:H4, 6ekc:H5, 6ekc:H6, 6ekc:H7, 6ekc:H8, 6ekc:J1, 6ekc:J2, 6ekc:J3, 6ekc:J4, 6ekc:J5, 6ekc:J6, 6ekc:J7, 6ekc:J8, 6ekc:L1, 6ekc:L2, 6ekc:L3, 6ekc:L4, 6ekc:L5, 6ekc:L6, 6ekc:L7, 6ekc:L8, 6ekc:N1, 6ekc:N2, 6ekc:N3, 6ekc:N4, 6ekc:N5, 6ekc:N6, 6ekc:N7, 6ekc:N8, 6ekc:P1, 6ekc:P2, 6ekc:P3, 6ekc:P4, 6ekc:P5, 6ekc:P6, 6ekc:P7, 6ekc:P8, 6ekc:R1, 6ekc:R2, 6ekc:R3, 6ekc:R4, 6ekc:R5, 6ekc:R6, 6ekc:R7, 6ekc:R8, 6ekc:T1, 6ekc:T2, 6ekc:T3, 6ekc:T4, 6ekc:T5, 6ekc:T6, 6ekc:T7, 6ekc:T8
11 8slg:A 429 17 0.1400 0.0163 0.4118 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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