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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DQKNKQKLQLIEELTSNADQVQRQVLEEILTRNADVEYLRRHDLNGRTDRETFKNIMPVITYEDIEPEINRIANGDKSPI
LSSKPISEFLTSSGTSGGERKLMPTIEEELDRRSLLYSLLMPVMSQFVPGLENGKGMYFLFIKSESKTPGGLPARPVLTS
YYKSSHFKERPYDPYTNYTSPNETILCSDSYQSMYSQMLCGLCQHQEVLRVGAVFASGFIRAIKFLEKHWIELVRDIRTG
TLSSLITDPSVREAVAKILKPSPKLADFVEFECKKSSWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTM
YASSECYFGVNLRPLCKPSEVSYTLIPSMAYFEFLPVHRQQELVDLVDVKLGQEYELVVTTYAGLCRYRVGDLLRVTGFK
NKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCLDGNTPIPPSV
FEDCCLAVEESFNTVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYF
SPKCPKWVPGHKQ

The query sequence (length=573) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5kod:D 566 571 0.9843 0.9965 0.9877 0.0
2 7vka:A 595 588 0.9127 0.8790 0.8895 0.0 5kod:A, 5kod:B, 5kod:C, 7vka:B
3 4b2g:B 572 579 0.6719 0.6731 0.6649 0.0 4b2g:A
4 7dk8:A 558 564 0.6579 0.6756 0.6684 0.0
5 6e1q:A 569 569 0.5096 0.5132 0.5132 0.0 6avh:A, 6avh:C, 6avh:D
6 4epm:A 554 554 0.4921 0.5090 0.5090 0.0 4eq4:A, 4eq4:B, 4eql:A, 4eql:B, 4l39:A, 4l39:B, 6oms:A, 6oms:B
7 6avh:B 541 564 0.4817 0.5102 0.4894 0.0
8 4ewv:B 492 552 0.4346 0.5061 0.4511 2.70e-156 4ewv:A
9 5ech:A 569 562 0.3962 0.3989 0.4039 2.09e-142 5ech:D, 5eci:A, 5eci:D, 5eck:A, 5eck:D, 5ecl:A, 5ecl:D, 5ecm:A, 5ecm:D, 5ecn:A, 5ecn:D, 5eco:A, 5eco:D, 5ecp:A, 5ecp:D, 5ecq:A, 5ecq:D, 5ecr:A, 5ecr:D, 4epl:A, 5gzz:A
10 4rpu:A 988 81 0.0366 0.0213 0.2593 0.29 4l3t:A, 4l3t:B, 4nge:A, 4nge:D, 4rpu:B
11 6xov:A 966 81 0.0366 0.0217 0.2593 0.31
12 7k7m:B 757 158 0.0628 0.0476 0.2278 1.3 7k7m:A, 7n6b:A
13 6ajf:A 901 158 0.0628 0.0400 0.2278 1.7 6ajg:A, 6ajh:A, 6ajj:A, 7c2m:A, 7c2n:A, 6or2:A, 7wnx:A
14 6aji:A 873 158 0.0628 0.0412 0.2278 1.7
15 6xzd:BP1 712 86 0.0332 0.0267 0.2209 5.3 6xzp:BP1, 6xzq:B, 6xzr:BP1, 6y0c:B
16 8k1l:A 979 64 0.0332 0.0194 0.2969 6.0
17 6o75:A 710 136 0.0541 0.0437 0.2279 8.8 6o74:A, 6o78:A, 6o79:A, 6o7b:A, 6o7d:A
18 6muu:A 780 136 0.0541 0.0397 0.2279 9.6 6iqw:A, 6mur:A, 6mus:A, 6mut:A, 6o7e:A, 6o7h:A
19 5zer:A 354 80 0.0366 0.0593 0.2625 9.7 5zer:B, 5zes:A, 5zfk:A, 5zfk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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