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BioLiP
>protein
DQKLSDFHAESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDD
GRTSASVLKK

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ee7:A 91 90 1.0000 0.9890 1.0000 3.04e-62 1m1p:A, 1m1p:B, 1m1p:C, 1m1p:D, 1m1p:E, 1m1p:F, 1m1q:A, 1m1r:A
2 6hr0:A 90 89 0.8444 0.8444 0.8539 2.21e-52
3 2k3v:A 86 84 0.6444 0.6744 0.6905 2.15e-40
4 1d4c:A 570 90 0.4000 0.0632 0.4000 6.38e-10 1d4c:C, 1d4c:B, 1d4c:D, 1d4d:A, 1d4e:A
5 2b7r:A 568 88 0.3556 0.0563 0.3636 8.84e-07 2b7s:A, 1e39:A, 1jrx:A, 1jrx:B, 1jry:A, 1jry:B, 1jrz:A, 1jrz:B, 1kss:A, 1ksu:A, 1ksu:B, 1lj1:A, 1lj1:B, 1m64:A, 1m64:B, 1p2e:A, 1p2h:A, 1q9i:A, 1qjd:A, 1y0p:A
6 1qo8:A 564 82 0.3333 0.0532 0.3659 1.24e-06 1qo8:D
7 2r6f:B 879 37 0.1556 0.0159 0.3784 0.006
8 2r6f:A 899 37 0.1556 0.0156 0.3784 0.006
9 3uwx:A 945 37 0.1556 0.0148 0.3784 0.006
10 3ux8:A 564 34 0.1444 0.0230 0.3824 0.025
11 1gws:A 503 80 0.2667 0.0477 0.3000 0.100 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
12 1qn0:A 112 29 0.1667 0.1339 0.5172 0.34 1qn1:A, 1wad:A
13 8b9d:4 677 39 0.1778 0.0236 0.4103 0.46 7pfo:4, 7plo:4
14 7w1y:4 653 39 0.1778 0.0245 0.4103 0.50 7w1y:C, 6xtx:4, 6xty:4
15 6lod:A 218 29 0.1222 0.0505 0.3793 0.83 6loe:A
16 3zqj:C 890 53 0.1556 0.0157 0.2642 0.91
17 3zqj:D 921 53 0.1556 0.0152 0.2642 0.91 3zqj:B, 3zqj:E
18 3zqj:A 944 53 0.1556 0.0148 0.2642 0.91
19 2ozy:A 142 63 0.2111 0.1338 0.3016 1.1 2p0b:A
20 8eik:E 378 65 0.1667 0.0397 0.2308 1.7
21 6btm:A 221 50 0.1444 0.0588 0.2600 1.8
22 8eii:B 439 65 0.1667 0.0342 0.2308 2.2 8eih:A, 8eih:B, 8eih:C, 8eii:A, 8eii:C, 8eij:A, 8eij:B, 8eik:A, 8eik:B, 6kda:A, 6kda:D, 6kdb:A, 6kdb:D, 6kdl:A, 6kdl:D, 6kdp:A, 6kdp:D, 6kdt:A, 6kdt:D, 7o45:A, 7o45:B, 7o45:C, 6u8p:A, 6u8p:D, 6u8v:A, 6u8v:D, 6u8w:A, 6u8w:D, 6u8x:A, 6u8x:D, 6u90:A, 6u90:D, 6u91:A, 6u91:D, 7v0e:A, 7v0e:B, 7v0e:C, 7v0e:D, 7v0e:E, 7v0e:F, 7v0e:G, 7v0e:H, 7x9d:A, 7x9d:D
23 8eik:C 407 65 0.1667 0.0369 0.2308 2.2
24 6f0k:A 207 29 0.1111 0.0483 0.3448 2.9
25 1duw:A 289 75 0.2556 0.0796 0.3067 3.9
26 4ltu:A 106 29 0.1333 0.1132 0.4138 4.5 4ltu:B
27 1gks:A 78 20 0.1222 0.1410 0.5500 4.9
28 1z9n:A 155 28 0.1000 0.0581 0.3214 5.0 1z9n:B, 1z9n:C, 1z9n:D, 1z9p:A, 1z9p:B
29 1pft:A 50 24 0.0889 0.1600 0.3333 5.9
30 8pj1:s 159 38 0.1222 0.0692 0.2895 6.9 7a09:4, 8oz0:U, 8ppl:Is, 7qp6:s, 6ybv:s, 6zmw:s, 6zp4:4
31 7dxg:A 698 64 0.2222 0.0287 0.3125 7.0 7dxf:A, 7dxf:D, 7dxf:B, 7dxf:C, 7dxg:D, 7dxg:C, 7dxg:B
32 8k5o:C 346 77 0.2222 0.0578 0.2597 7.2
33 8eih:D 256 32 0.1222 0.0430 0.3438 9.2
34 8hmc:B 1195 67 0.2111 0.0159 0.2836 9.2 8hmd:B
35 6v59:A 419 16 0.1000 0.0215 0.5625 10.0 6nx0:A, 6v59:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417