Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DQCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIG
EWHCQPL

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ejh:A 91 87 1.0000 0.9560 1.0000 5.85e-62 3ejh:B, 3gxe:B, 3gxe:A
2 3m7p:A 301 87 0.8966 0.2591 0.8966 3.85e-51
3 2rky:C 92 79 0.3793 0.3587 0.4177 5.75e-16 2rky:A, 2rl0:A, 2rl0:B, 2rl0:D, 2rl0:F, 2rl0:K
4 2rky:C 92 45 0.1839 0.1739 0.3556 0.019 2rky:A, 2rl0:A, 2rl0:B, 2rl0:D, 2rl0:F, 2rl0:K
5 2rl0:I 79 78 0.3563 0.3924 0.3974 1.95e-14
6 2rl0:I 79 44 0.1839 0.2025 0.3636 0.032
7 2rkz:C 90 81 0.3678 0.3556 0.3951 1.14e-13 3cal:A, 3cal:C, 4pz5:A, 2rkz:A, 2rkz:B, 2rkz:D, 2rkz:E, 2rkz:F, 3zrz:A, 3zrz:B
8 2rkz:C 90 41 0.1609 0.1556 0.3415 0.038 3cal:A, 3cal:C, 4pz5:A, 2rkz:A, 2rkz:B, 2rkz:D, 2rkz:E, 2rkz:F, 3zrz:A, 3zrz:B
9 1o9a:A 93 65 0.2644 0.2473 0.3538 3.74e-06
10 1o9a:A 93 37 0.1609 0.1505 0.3784 0.051
11 1o9a:A 93 31 0.1379 0.1290 0.3871 8.5
12 2xfg:A 446 50 0.1609 0.0314 0.2800 0.22
13 1iaw:A 304 65 0.2069 0.0592 0.2769 0.58 1iaw:B
14 3nhe:A 338 17 0.1034 0.0266 0.5294 3.4 6dgf:A, 2ibi:A, 3v6c:A, 3v6e:A, 5xu8:A, 5xve:A
15 2hd5:A 315 17 0.1034 0.0286 0.5294 3.6
16 2obx:A 150 50 0.1839 0.1067 0.3200 5.1 2obx:E, 2obx:B, 2obx:C, 2obx:D, 2obx:F, 2obx:J, 2obx:G, 2obx:H, 2obx:I
17 3hxg:A 183 36 0.1379 0.0656 0.3333 5.7 3hxi:A
18 6q8y:z 874 58 0.1954 0.0195 0.2931 7.5
19 4dod:A 454 50 0.1724 0.0330 0.3000 7.9 4doe:A
20 8rf0:A 2780 29 0.1379 0.0043 0.4138 9.3 8rfe:A, 8rfg:A
21 7r1n:AAA 184 61 0.1839 0.0870 0.2623 10.0 7r1n:BBB, 7r1n:CCC, 7r1n:DDD

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218