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BioLiP
>protein
DPVLCFTQYEESSGKCKGLLGGGVSVEDCCLNTAFAYQKRSGGLCQPCRSPRWSLWSTWAPCSVTCSEGSQLRYRRCVGW
NGQCSGKVAPGTLEWQLQACEDQQCC

The query sequence (length=106) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rus:A 234 106 1.0000 0.4530 1.0000 8.53e-72 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
2 6rus:A 234 54 0.2264 0.1026 0.4444 3.76e-05 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
3 6rus:A 234 29 0.1038 0.0470 0.3793 7.5 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
4 7yyk:A 114 53 0.1981 0.1842 0.3962 6.43e-04 1lsl:A
5 7yyk:A 114 53 0.2075 0.1930 0.4151 0.005 1lsl:A
6 5foe:B 435 53 0.1887 0.0460 0.3774 0.003 5foe:A
7 6ool:A 244 27 0.1226 0.0533 0.4815 0.23
8 6qig:A 581 54 0.1698 0.0310 0.3333 0.30 3ghm:A, 3ghn:A, 3vn4:A
9 4e0s:B 898 23 0.1038 0.0122 0.4783 0.42 7nyc:B, 7nyd:B
10 4a5w:B 871 23 0.1038 0.0126 0.4783 0.43
11 3t5o:A 871 23 0.1038 0.0126 0.4783 0.44
12 7za1:E 251 27 0.1132 0.0478 0.4444 0.76 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
13 7r84:A 52 25 0.1132 0.2308 0.4800 0.84 7r84:C, 7r84:D
14 7r84:B 45 25 0.1132 0.2667 0.4800 1.1 7r85:A, 7r86:C
15 7r86:D 40 25 0.1132 0.3000 0.4800 1.2
16 6qun:O 334 32 0.1415 0.0449 0.4688 5.3 6qun:R, 6quq:O, 6quq:R, 4z0h:O, 4z0h:R
17 3nhe:A 338 26 0.1132 0.0355 0.4615 5.3 6dgf:A, 2ibi:A, 3v6c:A, 3v6e:A, 5xu8:A, 5xve:A
18 6gjc:A 2770 57 0.1698 0.0065 0.3158 6.3 6gjc:B, 6gjc:C, 6gjc:D, 6gjc:E, 6gjc:F
19 4hqo:A 257 20 0.0943 0.0389 0.5000 7.2 4hql:A, 4hql:B, 4hqn:A, 4hqn:B
20 6cxo:A 465 60 0.1981 0.0452 0.3500 7.8 6cxo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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