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BioLiP
>protein
DPFTKTSLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVGPILKYYRHSINALNVY
LGLNNGKVLLSQKSAKMPELRDDLDIKTKDWYQEALKTNDIFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSE
DLQNLVAKTPGNTFLFDQKNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACITESA
DIINK

The query sequence (length=245) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6w3o:B 252 245 1.0000 0.9722 1.0000 0.0 6w3o:A, 6w3p:A, 6w3p:B, 6w3r:A, 6w3r:B, 6w3s:A, 6w3s:B, 6w3t:A, 6w3t:B, 6w3v:A, 6w3v:B, 6w3x:A, 6w3x:B, 6w3y:A, 6w3y:B, 4xmr:A, 4xmr:B
2 6py3:B 238 120 0.1510 0.1555 0.3083 7.53e-09 6pxy:A, 6py3:A, 6py4:A, 6py5:A, 6pyi:A, 6q0f:A, 6q0g:A
3 5ltx:A 243 154 0.1469 0.1481 0.2338 3.14e-06 5ltx:B, 5t65:A, 5t65:B, 5t7m:A, 5t7m:B
4 5lt9:B 253 160 0.1510 0.1462 0.2313 0.002 5lt9:A, 5lto:A, 5lto:B
5 6d8v:A 269 97 0.1265 0.1152 0.3196 0.002
6 6f9g:D 262 67 0.1020 0.0954 0.3731 0.004 6f9g:A, 6f9g:B, 6f9g:C, 6f9g:E
7 6fu4:A 297 74 0.0980 0.0808 0.3243 0.015 6fu4:B, 6fu4:C, 6fu4:D
8 6ior:A 241 64 0.0694 0.0705 0.2656 0.79 6iop:A, 6iop:B, 6ioq:A, 6ior:B, 6ior:C, 6ior:D, 6ios:A, 6iot:A, 6iot:B, 6iot:C, 6iot:D, 6iou:A, 6iou:B
9 1l1q:A 181 61 0.0898 0.1215 0.3607 1.0 1l1r:A
10 8bmv:B 249 83 0.0898 0.0884 0.2651 1.0 8bmv:A
11 5ave:A 252 93 0.0816 0.0794 0.2151 1.4 5avf:A, 5avf:B, 3c8c:A, 3c8c:B, 6iov:A, 6iov:B
12 2o2c:A 564 120 0.1143 0.0496 0.2333 2.2 2o2c:B, 2o2c:C
13 3fid:A 296 88 0.1061 0.0878 0.2955 3.6 3fid:B
14 3ksg:A 153 19 0.0490 0.0784 0.6316 5.7 3ksg:B
15 8x90:B 964 113 0.1143 0.0290 0.2478 8.3 8e59:D, 8e5a:D, 8e5b:D, 8epl:C, 8epm:C, 8fhs:D, 7mix:D, 7miy:D, 7uhf:D, 7uhg:D, 8we6:D, 8we7:D, 8we8:D, 8we9:D, 8wea:D, 8x91:B, 8x93:B
16 6l7x:A 203 31 0.0531 0.0640 0.4194 8.5 6l7w:A, 6l7y:A
17 7oyl:A 557 75 0.0816 0.0359 0.2667 9.4
18 6e0a:B 262 58 0.0653 0.0611 0.2759 9.5 6e0a:A
19 8e56:F 973 113 0.1143 0.0288 0.2478 9.7 8e57:F, 8e58:F, 8eog:D, 8fd7:D, 5gjw:F, 6jp5:F, 6jpa:F, 6jpb:F, 7vfs:B, 7vfu:B, 7vfv:B, 7vfw:B, 7xlq:D, 7yg5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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