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BioLiP
>protein
DPFMEALGLKVLHLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGPAVALSCRMDYFRPLGAGARVEA
RAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFRL

The query sequence (length=115) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1wlv:A 117 115 1.0000 0.9829 1.0000 2.99e-79 1wlv:C, 1wlv:D, 1wlv:B, 1wlv:E, 1wlv:F, 1wlv:G, 1wlv:H, 1wn3:A, 1wn3:C, 1wn3:D, 1wn3:B, 1wn3:E, 1wn3:G, 1wn3:H, 1wn3:F
2 5hmc:A 125 111 0.3391 0.3120 0.3514 3.43e-10
3 3f5o:A 138 97 0.2609 0.2174 0.3093 4.49e-06 3f5o:B, 3f5o:C, 3f5o:D, 3f5o:E, 3f5o:F, 3f5o:G, 3f5o:H
4 3lbe:B 124 73 0.2087 0.1935 0.3288 5.93e-06 3lbe:A, 3lbe:C, 3lbe:D
5 4zrb:E 128 102 0.2522 0.2266 0.2843 2.83e-05 4zrb:A, 4zrb:D, 4zrb:B, 4zrb:C, 4zrb:G, 4zrb:H, 4zrb:F
6 1q4s:A 142 112 0.2522 0.2042 0.2589 0.73 1q4s:B, 1q4t:A, 1q4t:B, 1q4u:A, 1q4u:B, 3r32:A, 3r32:B, 3r34:A, 3r34:B, 3r35:A, 3r35:B, 3r37:A, 3r37:B, 3r3a:A, 3r3a:B, 3r3b:A, 3r3b:B, 3r3c:A, 3r3c:B, 3r3d:A, 3r3d:B, 3r3f:A, 3r3f:B, 3tea:A, 3tea:B
7 9fcf:A 265 29 0.1043 0.0453 0.4138 2.0 9fcg:A
8 7cz3:A 168 91 0.2174 0.1488 0.2747 8.8 7cz3:B, 7cz3:C, 7cz3:D, 7cz3:E, 7cz3:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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