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BioLiP
>protein
DPEVLAKNKGCVACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPNAVSDDEAQTLAKWVLSQ
K

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 351c:A 82 81 0.9877 0.9756 0.9877 5.21e-55 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B
2 5xec:C 80 79 0.8889 0.9000 0.9114 1.31e-48 5xed:C
3 1cor:A 82 81 0.6790 0.6707 0.6790 4.18e-36 6kq1:A, 6kq1:B
4 5xec:A 82 81 0.6667 0.6585 0.6667 3.76e-34 5xed:A
5 1cch:A 82 81 0.6790 0.6707 0.6790 3.93e-34 1fi3:A, 2i8f:A
6 1a56:A 81 78 0.5556 0.5556 0.5769 1.25e-26 1a8c:A, 4jcg:A, 3zow:A, 3zow:B, 3zow:C, 3zow:D, 3zow:E, 3zow:F, 3zow:G, 3zow:H, 3zow:I, 3zow:J, 3zow:K, 3zow:L, 3zow:M, 3zow:N, 3zow:O, 3zow:P, 3zow:Q, 3zow:R, 3zox:A, 3zox:B, 3zox:C, 3zox:D, 3zoy:A, 3zoy:B, 3zoy:C, 3zoy:D
7 5aur:A 83 82 0.5679 0.5542 0.5610 2.58e-25 2ai5:A, 5aur:C, 5aur:E, 5aur:G, 5aus:A, 5aus:C, 1ayg:A, 3vym:A, 1ynr:A, 1ynr:B, 1ynr:C, 1ynr:D, 4zid:A
8 2d0s:A 79 80 0.4938 0.5063 0.5000 1.77e-23
9 4xxl:A 92 80 0.3333 0.2935 0.3375 1.97e-09
10 3x15:A 87 89 0.3333 0.3103 0.3034 2.31e-06 3x15:G, 3x15:D, 3x15:J, 2zxy:A
11 3cp5:A 116 25 0.1358 0.0948 0.4400 7.17e-04 6cuk:A, 6cun:A
12 1w2l:A 97 26 0.1358 0.1134 0.4231 0.004
13 1fj0:A 114 29 0.1728 0.1228 0.4828 0.037 1fj0:B, 1fj0:C, 1fj0:D, 1hh7:A, 1i8o:A, 1i8p:A, 1i8p:B, 1i8p:C, 1i8p:D
14 5z25:A 96 32 0.1358 0.1146 0.3438 0.13
15 2zbo:A 86 73 0.2469 0.2326 0.2740 0.44 2zbo:C, 2zbo:E, 2zbo:G, 2zbo:I, 2zbo:K
16 2i6j:A 161 35 0.1975 0.0994 0.4571 0.68 2dxp:A, 2i6m:A, 2i6o:A, 2i6p:A, 7mpc:A, 7mpd:A
17 4v6w:CK 158 44 0.1605 0.0823 0.2955 3.1
18 7aor:aw 160 25 0.1358 0.0688 0.4400 4.6
19 1qn2:A 99 26 0.1358 0.1111 0.4231 4.6 1qn2:B, 1qn2:C
20 3o5c:A 308 11 0.0988 0.0260 0.7273 6.8 3o5c:B, 3o5c:C, 3o5c:D
21 3a9f:A 78 67 0.2099 0.2179 0.2537 7.0 3a9f:B
22 8pv1:LK 158 42 0.1728 0.0886 0.3333 7.1 8i9t:LK, 8i9v:LK, 8i9w:LK, 8i9x:LK, 8i9y:LK, 8i9z:LK, 8ia0:LK, 7olc:LK, 7old:LK, 8oo0:LK, 8pv2:LK, 8pv3:LK, 8pv4:LK, 8pv5:LK, 8pv6:LK, 8pv7:LK, 8pv8:LK, 8pvk:LK, 8pvl:LK, 7z3n:LK, 7z3o:LK
23 8idt:y 165 42 0.1728 0.0848 0.3333 7.6 7a01:M2, 5a8l:G, 5aj0:Aq, 9bdn:AL12, 9bdp:AL12, 8bhf:f1, 8bpo:r2, 8btk:Bt, 6d90:t, 6d9j:t, 9f1b:Bt, 9f1c:Bt, 9f1d:Bt, 8fkr:BA, 8fks:BA, 8fkt:BA, 8fku:BA, 8fkv:BA, 8fkw:BA, 8fkx:BA, 8fky:BA, 8fkz:BA, 8fl0:BA, 8fl2:BA, 8fl3:BA, 8fl4:BA, 8fl6:BA, 8fl7:BA, 8fl9:BA, 8fla:BA, 8flb:BA, 8flc:BA, 6frk:4, 6ftg:t, 6fti:t, 6ftj:t, 8g5z:LK, 8g60:LK, 8g6j:LK, 6gz3:Aq, 6gz4:Aq, 6gz5:Aq, 6hcf:t3, 6hcj:u3, 6hcm:t3, 6hcq:u3, 8idy:y, 8ine:y, 8inf:y, 8ink:y, 8ipd:y, 8ipx:y, 8ipy:y, 8ir1:y, 8ir3:y, 3j7p:K, 3j92:t, 3jag:t, 3jah:t, 3jai:t, 3jaj:K, 3jan:K, 8k2c:Lt, 7ls1:k, 7ls2:k, 5lzs:t, 5lzt:t, 5lzu:t, 5lzv:t, 5lzw:t, 5lzx:t, 5lzy:t, 5lzz:t, 6mtd:t, 6mte:t, 7nwg:u3, 7nwh:t, 7nwi:t, 7o7y:Bt, 7o7z:Bt, 7o80:Bt, 7o81:Bt, 6olg:Aq, 8p2k:Bt, 8q87:Bt, 6r5q:t, 6r6g:t, 6r6p:t, 6r7q:t, 8scb:t, 6sgc:t2, 6t59:t3, 4v5z:Bi, 4v6x:CK, 8xsx:LK, 8xsy:Lt, 8xsz:Lt, 8yoo:Lt, 8yop:Lt, 6zm7:Lt, 6zme:Lt, 6zmi:Lt, 6zmo:Lt, 6zvk:M2
24 2zzs:A 81 69 0.2222 0.2222 0.2609 8.1 2zzs:B, 2zzs:C, 2zzs:D, 2zzs:E, 2zzs:F, 2zzs:G, 2zzs:H, 2zzs:I, 2zzs:J, 2zzs:K, 2zzs:L, 2zzs:M, 2zzs:N, 2zzs:O, 2zzs:P, 2zzs:Q, 2zzs:R, 2zzs:S, 2zzs:T, 2zzs:U, 2zzs:V, 2zzs:W, 2zzs:X, 2zzs:Y, 2zzs:Z, 2zzs:1, 2zzs:2, 2zzs:3, 2zzs:4, 2zzs:5, 2zzs:6
25 2blf:B 81 47 0.1975 0.1975 0.3404 8.1 2bpb:B, 2c9x:B, 2ca3:B, 2ca4:B
26 7olc:SU 103 31 0.1358 0.1068 0.3548 8.5 7old:SU, 8oo0:SU, 7z3n:SU, 7z3o:SU
27 7dwx:A 605 19 0.1111 0.0149 0.4737 9.4 7dwx:C, 8i92:B, 8i92:D, 8i93:B, 8i93:D, 6m17:A, 6m17:C, 8wby:A, 8wby:D, 8wbz:A, 8wbz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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