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BioLiP
>protein
DNMFQIGKMRYVSVRDFKKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRK

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ycs:C 68 66 1.0000 0.9559 0.9848 1.74e-41 2c62:A, 2c62:B, 2phe:A, 2phe:B, 4usg:A, 4usg:B, 6ycs:A, 6ycs:B, 6ycs:D
2 5zg9:A 83 63 0.3846 0.3012 0.3968 3.12e-08 4bhm:A, 4bhm:D, 4bhm:B, 4bhm:F, 4bhm:C
3 3lxd:A 409 32 0.1692 0.0269 0.3438 0.27
4 6s3t:A 374 39 0.1538 0.0267 0.2564 1.4 6rux:A, 6rux:B, 6rux:C, 6s3t:B, 6s3t:S, 6s3t:T
5 5f55:A 705 20 0.1385 0.0128 0.4500 2.4 5f54:A, 5f56:A, 6lrd:A
6 8tg3:A 187 27 0.1385 0.0481 0.3333 2.9 8tg4:A
7 1ddz:A 481 37 0.1846 0.0249 0.3243 4.2 1ddz:B
8 7f0r:D 1339 58 0.2923 0.0142 0.3276 5.0 7vf9:D, 7xl3:D, 7xl4:D, 7xya:D, 7xyb:D
9 2vs1:A 398 57 0.2615 0.0427 0.2982 5.0 2jjq:A
10 6l1x:A 708 31 0.1385 0.0127 0.2903 5.2
11 6fwf:A 712 31 0.1385 0.0126 0.2903 5.2
12 6l3h:A 741 31 0.1385 0.0121 0.2903 5.2 6l3h:B
13 3nrj:I 177 36 0.2000 0.0734 0.3611 5.6 3nrj:A, 3nrj:B, 3nrj:C, 3nrj:D, 3nrj:E, 3nrj:F, 3nrj:G, 3nrj:H, 3nrj:J, 3nrj:K, 3nrj:L
14 3a6k:A 259 24 0.1231 0.0309 0.3333 6.5 3a6d:A, 3a6d:B, 3a6d:C, 3a6d:D, 3a6d:E, 3a6d:F, 3a6e:A, 3a6e:B, 3a6e:C, 3a6e:D, 3a6e:E, 3a6e:F, 3a6f:A, 3a6f:B, 3a6f:C, 3a6f:D, 3a6f:E, 3a6f:F, 3a6g:A, 3a6g:B, 3a6g:C, 3a6g:D, 3a6g:E, 3a6g:F, 3a6h:A, 3a6h:B, 3a6h:C, 3a6h:D, 3a6h:E, 3a6h:F, 3a6j:A, 3a6j:B, 3a6j:C, 3a6j:D, 3a6j:E, 3a6j:F, 3a6k:B, 3a6k:C, 3a6k:D, 3a6k:E, 3a6k:F, 3a6l:A, 3a6l:B, 3a6l:C, 3a6l:D, 3a6l:E, 3a6l:F, 1j2t:A, 1j2t:B, 1j2t:C, 1j2t:D, 1j2t:E, 1j2t:F, 1j2u:A, 1j2u:B, 1j2u:C, 1j2u:D, 1j2u:E, 1j2u:F, 1q3k:A, 1q3k:B, 1q3k:C, 1q3k:D, 1q3k:E, 1q3k:F, 1v7z:A, 1v7z:B, 1v7z:C, 1v7z:D, 1v7z:E, 1v7z:F
15 3c0g:B 320 16 0.1077 0.0219 0.4375 7.9 3c0g:A, 3c0h:A, 3c0h:B, 3c0i:A, 3mfr:A, 3mfs:A, 3mfu:A, 7oai:A, 7oai:B, 7oai:C, 7oai:D, 7oaj:A, 7oaj:B, 7oaj:C, 7oaj:D, 7oak:A, 7oak:B, 7oak:C, 7oak:D, 7oal:A, 7oal:B, 7oal:C, 7oal:D
16 1dii:A 515 17 0.1385 0.0175 0.5294 8.3 1dii:B, 1diq:A, 1diq:B, 1wve:A, 1wve:B, 1wvf:A
17 7a26:CCC 348 26 0.1385 0.0259 0.3462 9.0 7a26:FFF, 7a26:GGG, 7a26:HHH

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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