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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DNMASLIQRIARQASLTFREAPMQPGFPENLSKLKSLLTQLRAEDLNIAPRKATLQPLPPNLPPVTYMHIYETDGFSLGV
FLLKSGTSIPLHDHPGMHGMLKVLYGTVRISCMDKLDAGGGQRPRALPPEQQFEPPLQPREREAVRPGVLRSRAEYTEAS
GPCILTPHRDNLHQIDAVEGPAAFLDILAPPYDPDDGRDCHYYRVLEPVASDLPREVWLLETPQADDFWCEGEPYPGPKV
FP

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7rei:A 243 242 0.9959 0.9918 0.9959 1.16e-179 8u9j:A, 8u9j:B, 8uan:A
2 7lvz:D 246 248 0.8636 0.8496 0.8427 8.85e-141 7lvz:A, 7lvz:B, 7lvz:C
3 7chj:B 226 252 0.3140 0.3363 0.3016 6.94e-24 7chj:A, 6s0p:A, 6s7e:A
4 7chi:A 220 248 0.2975 0.3273 0.2903 2.58e-22
5 7cxz:A 245 177 0.2149 0.2122 0.2938 5.57e-18
6 8pme:C 343 129 0.1322 0.0933 0.2481 0.43 8pme:B
7 6bgf:A 188 130 0.1157 0.1489 0.2154 0.64 2atf:A, 2b5h:A, 6bgm:A, 6bpr:A, 6bps:A, 6bpt:A, 6bpu:A, 6bpv:A, 6bpw:A, 6bpx:A, 6cdh:A, 6cdn:A, 6e87:A, 5efu:A, 3eln:A, 5ezw:A, 2gh2:A, 5i0r:A, 5i0s:A, 5i0t:A, 5i0u:A, 2ic1:A, 4ieo:A, 4iep:A, 4ieq:A, 4ier:A, 4ies:A, 4iet:A, 4ieu:A, 4iev:A, 4iew:A, 4iex:A, 4iey:A, 4iez:A, 4jtn:A, 4jto:A, 4kwj:A, 4kwk:A, 4kwl:A, 6n42:A, 6n43:A, 4pix:A, 4piy:A, 4piz:A, 4pjy:A, 6u1m:A, 6u4l:A, 6u4s:A, 6u4v:A, 4ubg:A, 4ubh:A, 8vl9:D, 8vlb:D, 4xet:A, 4xez:A, 4xf0:A, 4xf1:A, 4xf3:A, 4xf4:A, 4xf9:A, 4xfa:A, 4xfb:A, 4xfc:A, 4xff:A, 4xfg:A, 4xfh:A, 4xfi:A, 4ysf:A, 4yyo:A, 4z82:A
8 4qma:A 192 81 0.1116 0.1406 0.3333 0.80
9 7ck2:A 352 109 0.1198 0.0824 0.2661 1.6 7ck2:B
10 4oec:A 248 85 0.0992 0.0968 0.2824 3.5 4oec:B, 4oec:C, 4oec:D
11 3ddy:A 175 37 0.0579 0.0800 0.3784 3.9
12 5ahn:A 297 41 0.0785 0.0640 0.4634 7.4
13 5ahm:A 354 41 0.0785 0.0537 0.4634 7.5 5ahm:B
14 8pmi:B 409 132 0.1364 0.0807 0.2500 7.7 8has:A, 8has:B, 8has:C, 8has:D, 8has:E, 8has:F, 8hau:A, 8hau:B, 8hau:C, 8hau:D, 8hau:E, 8hau:F, 8pme:A, 8pmg:A, 8pmg:B, 8pmg:C, 8pmg:D, 8pmg:E, 8pmg:F, 8pmi:A, 8pmi:C, 8pmi:D, 8pmi:E, 8pmi:F, 8pml:A, 8pml:B, 8pml:C, 8pml:D, 8pml:E, 8pml:F, 8pmm:A, 8pmm:B, 8pmm:C, 8pn1:A, 8pn1:B, 8pn1:C, 8pn1:D, 8pn1:E, 8pn1:F, 8pn2:A, 8pn2:B, 8pn2:C, 8pn2:D, 8pn2:E, 8pn2:F, 7y77:A, 7y77:B, 7y77:C
15 7pji:A 445 41 0.0785 0.0427 0.4634 8.0 4dqw:A, 4dqw:B, 6gk9:A, 6gk9:D, 7pji:B
16 2y53:A 529 114 0.1446 0.0662 0.3070 8.3 2vro:A, 2vro:B, 2y53:B, 2y5d:A, 2y5d:B
17 3qe3:A 351 85 0.1074 0.0741 0.3059 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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