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BioLiP Library
>protein
DMTWEGEYPPSKVLGPIMSKMPSGLLGLISIACAAVCVYSIAQSGVLQQQPGAYENGSWVKWYYVLGSFGGPLAWGTHVA
SWIQRKNGM

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6l4u:2u 89 89 0.9888 0.9888 0.9888 5.44e-61 6ly5:h
2 7y5e:RN 78 81 0.3820 0.4359 0.4198 1.54e-11 7y5e:R2, 7y7a:R7, 7y7a:Ro
3 8wm6:R 90 88 0.3371 0.3333 0.3409 2.37e-06 8wmj:R, 8wmv:R, 8wmw:R
4 8jw0:h 132 78 0.2472 0.1667 0.2821 1.97e-05
5 8jze:h 131 87 0.2921 0.1985 0.2989 4.84e-05 8jzf:h
6 7y7b:R 92 25 0.1685 0.1630 0.6000 6.21e-05 7y8a:R
7 8jjr:r 131 87 0.2809 0.1908 0.2874 3.67e-04
8 6co7:A 1061 54 0.2022 0.0170 0.3333 0.57 6co7:B, 6co7:C, 6co7:D
9 6v3f:A 1234 76 0.2809 0.0203 0.3289 2.0 6v3h:A
10 3c1t:B 326 37 0.1685 0.0460 0.4054 2.6 3bxx:A, 3bxx:B, 3bxx:C, 3bxx:D, 3bxx:E, 3bxx:F, 3c1t:A, 3c1t:C, 3c1t:D, 2c29:D, 2c29:F, 2iod:A, 2iod:B, 2iod:C, 2iod:D, 2nnl:D, 2nnl:F
11 4v61:BE 266 41 0.1685 0.0564 0.3659 4.0 6eri:AC, 5h1s:E, 5mlc:D, 5mmi:C, 5mmm:C, 5x8p:C, 5x8t:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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