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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DMDTLRERLLAGDRAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV
AVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA
DLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGK
GLDSLWSRIEDHRSKLTATGEIAGKRREQDVKWMWALVHERLHQRLVGSAEVRQATAEAERAVAGGEHSPAAGADAIATL
IGL

The query sequence (length=323) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jyb:A 323 323 1.0000 1.0000 1.0000 0.0 8dpb:A, 8dpb:B, 4jyb:B, 4jyc:D, 4lc1:A, 4lc1:B, 2qm7:A, 2qm7:B
2 3tk1:B 319 305 0.5294 0.5361 0.5607 9.52e-109
3 3nxs:A 306 306 0.5015 0.5294 0.5294 6.22e-101
4 3p32:A 306 312 0.5108 0.5392 0.5288 2.09e-98 4gt1:A, 3md0:A
5 8gju:F 332 326 0.4737 0.4608 0.4693 4.82e-97 8gju:D, 8gju:A, 8gju:B
6 3tk1:A 293 305 0.4799 0.5290 0.5082 1.55e-89
7 2www:D 314 326 0.4118 0.4236 0.4080 1.61e-70 2www:A, 2www:B, 2www:C
8 8ssl:A 1072 198 0.2167 0.0653 0.3535 1.91e-19 5cjt:A, 5cjt:B, 5cju:A, 5cju:B, 5cjv:A, 5cjv:B, 5cjw:A, 5cjw:B, 8ssl:B, 8ssl:C, 4xc6:A, 4xc6:B, 4xc7:A, 4xc8:A, 4xc8:B
9 6lsr:1 247 45 0.0588 0.0769 0.4222 2.14e-04
10 7obq:y 454 155 0.1455 0.1035 0.3032 0.006 6frk:y, 2go5:1, 5l3q:B, 5l3q:D, 6y32:B, 6y32:D, 6y32:F, 6y32:H
11 2gks:B 529 46 0.0526 0.0321 0.3696 0.039 2gks:A
12 8fkt:NB 387 192 0.1610 0.1344 0.2708 0.054 8fkp:NB, 8fku:NB, 8fkv:NB, 8fkw:NB, 8fkx:NB, 8fky:NB, 8fkz:NB, 8fl0:NB, 8ink:u, 8ipd:u, 8ipx:u, 8ipy:u
13 1cp2:A 269 42 0.0557 0.0669 0.4286 0.14 1cp2:B
14 2afh:E 289 73 0.0650 0.0727 0.2877 0.19 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
15 7y9i:A 362 52 0.0433 0.0387 0.2692 0.23
16 8i9w:CL 397 26 0.0495 0.0403 0.6154 0.24 8i9t:CL, 8i9v:CL, 8i9x:CL, 8i9y:CL, 8i9z:CL, 8ia0:CL, 8pv1:CL, 8pv2:CL, 8pv3:CL, 8pv4:CL, 8pv5:CL, 8pv6:CL, 8pv7:CL, 8pv8:CL, 8pvk:CL, 8pvl:CL
17 5ee3:B 364 51 0.0433 0.0385 0.2745 0.26 5ee3:A, 5ee9:A
18 8pv1:Cd 462 89 0.0898 0.0628 0.3258 0.33 8pv2:Cd, 8pv3:Cd, 8pv4:Cd, 8pv5:Cd, 8pv6:Cd, 8pv7:Cd, 8pv8:Cd, 8pvk:Cd, 8pvl:Cd
19 6g0z:A 290 24 0.0433 0.0483 0.5833 0.38 6g0z:B, 6g12:A, 6g12:B, 6g14:B, 6g14:A, 6g15:A, 6g15:B
20 8osg:B 323 73 0.0774 0.0774 0.3425 0.39 8osf:A, 8osf:B, 8osf:C, 8osf:D, 8osf:E, 8osg:C, 8osg:D, 8osg:E
21 6nzj:A 273 74 0.0712 0.0842 0.3108 0.59 6nzj:B
22 8ui7:B 319 62 0.0619 0.0627 0.3226 0.61 8ui8:B, 8ui9:B, 8uii:B, 8umt:B, 8umu:B, 8umv:B, 8umw:B, 8umy:B, 8un0:B, 8unj:B, 6vvo:B, 7z6h:F
23 5ean:A 1051 27 0.0464 0.0143 0.5556 0.62 5eaw:A, 5eaw:B, 5eax:A, 5eax:B
24 1puj:A 261 33 0.0526 0.0651 0.5152 0.74 6ppk:W
25 8jxu:A 1410 43 0.0464 0.0106 0.3488 0.82 8jxq:A
26 2ohf:A 327 23 0.0341 0.0336 0.4783 0.97
27 5nrn:B 211 48 0.0588 0.0900 0.3958 0.99 1g3u:A, 1gsi:A, 1gtv:A, 1gtv:B, 1mrn:A, 1mrs:A, 1n5i:A, 1n5j:A, 1n5k:A, 1n5k:B, 1n5l:A, 1n5l:B, 5nrq:A, 1w2g:A, 1w2g:B, 1w2h:A, 1w2h:B, 6yt1:A, 6yt1:B
28 3add:A 251 35 0.0464 0.0598 0.4286 1.00 3a4l:A, 3a4l:B, 3a4m:A, 3a4m:B, 3adb:A, 3adb:B, 3adc:A, 3adc:B, 3add:B, 3am1:A
29 6yxx:EM 308 58 0.0588 0.0617 0.3276 1.1
30 6n8n:W 377 47 0.0495 0.0424 0.3404 1.2 6n8o:W
31 5nq5:A 191 48 0.0588 0.0995 0.3958 1.2 5nr7:A, 5nr7:B, 5nrn:A, 5nrq:B, 4unn:A, 4unn:B, 4unp:A, 4unq:A, 4unq:B, 4unr:A, 4unr:B, 4uns:A, 4uns:B
32 1mky:A 407 26 0.0402 0.0319 0.5000 1.3
33 7rr5:R 355 61 0.0681 0.0620 0.3607 1.5
34 6qtz:o 325 20 0.0341 0.0338 0.5500 1.6 6qik:o, 6ri5:o, 6rzz:o, 6s05:o
35 1vco:A 531 47 0.0526 0.0320 0.3617 1.6 1vcn:A
36 2ynm:B 268 44 0.0464 0.0560 0.3409 1.8 2ynm:A
37 5t62:W 306 20 0.0341 0.0359 0.5500 1.9
38 8rq4:A 1402 39 0.0402 0.0093 0.3333 2.0
39 3qsy:A 415 72 0.0743 0.0578 0.3333 2.1 2aho:A, 3cw2:B, 6i5m:A, 5jb3:7, 5jbh:7, 4m0l:A, 4m0l:B, 4m0l:C, 4m0l:D, 4m0l:E, 4m0l:F, 4m2l:A, 4m4s:A, 4nbs:A, 3pen:A, 2pmd:A, 2pmd:B, 4qfm:A, 4qhy:A, 2qmu:A, 2qn6:A, 6r8s:A, 6r8t:A, 4rcy:A, 4rcz:A, 4rd0:A, 4rd1:A, 4rd2:A, 4rd3:A, 4rd4:A, 4rd6:A, 4rjl:A, 3sjz:A, 6sw9:7, 6swc:7, 3v11:A
40 6f89:A 344 109 0.1084 0.1017 0.3211 2.1 6f87:A, 6f87:B, 6f87:C, 6f87:D, 6f89:B, 6f8y:A, 6f8y:B, 6f8y:C, 6f8y:D
41 5dn8:A 405 38 0.0526 0.0420 0.4474 2.3
42 3dm5:A 416 111 0.0836 0.0649 0.2432 2.4 3dm5:B
43 6cy5:B 318 44 0.0495 0.0503 0.3636 2.9 6cy5:A
44 3e70:C 307 174 0.1331 0.1401 0.2471 3.2
45 3gp8:A 551 47 0.0557 0.0327 0.3830 3.6 3gpl:A, 3gpl:B
46 1wf3:A 296 40 0.0526 0.0574 0.4250 3.8
47 5zme:A 638 39 0.0464 0.0235 0.3846 4.0 5zmf:A
48 8kie:y 363 58 0.0650 0.0579 0.3621 4.0
49 2dby:A 355 18 0.0372 0.0338 0.6667 4.1
50 5if9:A 251 34 0.0402 0.0518 0.3824 4.2 5if9:B, 5ihp:A, 5ihp:B
51 7tfh:B 320 38 0.0402 0.0406 0.3421 4.3 8dqw:B, 8dqx:B, 8dqz:B, 8dr0:B, 8dr1:B, 8dr3:B, 8dr4:B, 8dr5:B, 8dr6:B, 8dr7:B, 8fs3:B, 8fs4:B, 8fs5:B, 8fs6:B, 8fs7:B, 8fs8:B, 7sgz:B, 7sh2:B, 7st9:B, 7stb:B, 7ste:B, 1sxj:B, 7tfi:B, 7tfj:B, 7tfk:B, 7tfl:B, 7thj:B, 7thv:B, 8thb:B, 8thc:B, 8thd:B, 7ti8:B, 7tib:B, 7tic:B, 7tid:B, 7tku:B, 8tw7:4, 8tw8:4, 8twa:4, 8twb:4, 7u19:B, 7u1a:B, 7u1p:B
52 8bx8:C 3947 46 0.0526 0.0043 0.3696 5.3 7k58:C, 7k5b:C, 7kek:C
53 1nks:C 194 29 0.0402 0.0670 0.4483 5.6 1nks:D, 1nks:F
54 8fl2:NC 511 24 0.0372 0.0235 0.5000 6.1 8fkz:NC, 8fl0:NC, 8fl3:NC, 8fl4:NC, 8idt:A, 8idy:A, 8ie3:A, 8ine:A, 8inf:A, 8ink:w, 8ipd:w, 8ipx:w, 8ipy:w, 8ir1:w, 8ir3:w
55 5d00:A 361 86 0.0650 0.0582 0.2442 6.4 5d00:B, 5d01:A, 5d01:B
56 7oi6:y 331 211 0.1455 0.1420 0.2227 6.5 8pk0:t
57 5cb8:B 176 39 0.0433 0.0795 0.3590 6.7 5cb6:A, 5cb6:B, 5cb6:C, 5cb6:D, 5cb6:E, 5cb6:F, 5cb8:A
58 7yq0:A 173 32 0.0402 0.0751 0.4062 7.3 7yq0:B, 7yq1:A, 7yq1:B, 7yq1:C, 7yq1:D, 7yq1:E, 7yq1:F
59 7lgm:A 719 65 0.0650 0.0292 0.3231 7.7 7lgm:B
60 3cnl:A 233 22 0.0402 0.0558 0.5909 9.7 3cnn:A, 3cno:A
61 1e2f:A 210 46 0.0526 0.0810 0.3696 9.9 1e2d:A, 1e2e:A, 1e2g:A, 1e2q:A, 1e98:A, 1e99:A, 1e9a:A, 1e9b:A, 1e9c:A, 1e9d:A, 1e9e:A, 1e9f:A, 1nmx:A, 1nmy:A, 1nmz:A, 1nn0:A, 1nn1:A, 1nn3:A, 1nn5:A, 2xx3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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