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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSE
NRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHD
PATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWY
KGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD

The query sequence (length=305) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4xr0:A 308 305 1.0000 0.9903 1.0000 0.0 1ecr:A, 2ewj:A, 2i05:A, 2i06:A, 4xr1:A, 4xr2:A, 4xr3:A
2 2gk1:I 440 134 0.1016 0.0705 0.2313 1.5 2gk1:J, 2gk1:K, 2gk1:L
3 4lqx:B 309 48 0.0525 0.0518 0.3333 2.2 4lqx:A
4 4a8f:B 664 47 0.0590 0.0271 0.3830 8.0 4a8f:A, 4a8f:C, 4a8k:B, 4a8k:A, 4a8k:C, 4a8m:Q, 4a8m:P, 4a8m:R, 4a8o:A, 4a8o:B, 4a8o:C, 4a8q:A, 4a8q:B, 4a8q:C, 4a8s:A, 4a8s:B, 4a8s:C, 4a8w:A, 4a8w:B, 4a8w:C, 4a8y:A, 4a8y:B, 4a8y:C, 4b02:A, 4b02:B, 4b02:C, 5fj6:A, 5fj7:C, 1hhs:A, 1hhs:B, 1hhs:C, 1hht:P, 1hht:Q, 1hht:R, 1hi0:P, 1hi0:Q, 1hi0:R, 1hi1:A, 1hi1:B, 1hi1:C, 1hi8:A, 1hi8:B, 2jlf:A, 2jlf:B, 2jlg:A, 2jlg:B, 2jlg:C, 1uvi:A, 1uvi:B, 1uvi:C, 1uvj:A, 1uvj:B, 1uvj:C, 1uvk:A, 1uvk:C, 1uvk:E, 1uvl:A, 1uvl:C, 1uvl:E, 1uvm:A, 1uvm:B, 1uvm:C, 1uvn:A, 1uvn:C, 1uvn:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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