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BioLiP
>protein
DLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETL
FPSVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLG

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5brk:A 194 161 0.9747 0.7938 0.9565 1.44e-112 5b5v:A, 5b5v:C, 5b5v:B, 5b5v:D, 5b5w:A, 5b6b:A, 5b6b:B, 5b6b:D, 5b6b:F, 5b6b:H, 5b6b:K, 5b6b:M, 5b6b:O, 5brm:A, 5brm:B, 5brm:C, 5brm:D, 5brm:E, 5brm:F, 4j1v:A, 4j1v:C, 4jiz:A, 6mcp:B, 6mcp:D, 6mcq:B, 6mcq:D, 1pi1:A, 5twf:A, 5twf:B, 5twg:A, 5twh:A, 5xqz:A, 5xqz:B
2 2hjn:A 206 161 0.5443 0.4175 0.5342 1.98e-55 5ncn:A
3 5ncm:A 183 160 0.4304 0.3716 0.4250 1.53e-44
4 7k36:H 177 96 0.1456 0.1299 0.2396 0.002
5 6aqe:B 266 73 0.1329 0.0789 0.2877 0.27 6aqe:A, 7nmj:A, 7nmj:B, 7nmj:C, 7nmj:D, 7plj:A, 7plj:B, 7plj:C, 7plj:D
6 5yf4:A 129 143 0.1835 0.2248 0.2028 0.39
7 3zq4:A 550 109 0.1899 0.0545 0.2752 0.41 3zq4:C, 3zq4:D, 3zq4:E
8 5mth:H 221 94 0.1203 0.0860 0.2021 1.0 5mo3:H, 5mp1:H, 5mp1:C, 5mp1:F, 5mp1:J, 5mp3:A, 5mp3:H, 5mp5:E, 5mp5:H, 5mp5:A, 5mth:A, 2y6s:D, 2y6s:H
9 4zme:A 262 31 0.0823 0.0496 0.4194 2.4 5dyj:A, 5dyj:B, 5e4h:A, 5e4h:B, 5e4h:C, 5e4h:D, 5e4h:E, 5e4h:F, 5e4h:G, 5e4h:H, 5e9e:A, 5e9e:B, 3lkm:A, 3lla:A, 3lla:B, 3lmh:A, 3lmh:B, 3lmi:A, 3lmi:B, 3lmi:C, 3lmi:D, 3pdt:A, 4zme:B, 4zmf:A, 4zmf:B, 4zs4:A, 4zs4:B
10 3thw:B 860 60 0.1013 0.0186 0.2667 4.1 8oma:B, 8omo:B, 8omq:B, 3thx:B, 3thy:B, 3thz:B
11 1j1z:A 386 31 0.0759 0.0311 0.3871 4.2 1j1z:B, 1j1z:C, 1j1z:D, 1j20:A, 1j20:B, 1j20:C, 1j20:D, 1j21:A, 1j21:B, 1j21:C, 1j21:D, 1kh2:A, 1kh2:B, 1kh2:C, 1kh2:D, 1kh3:A, 1kh3:B, 1kh3:C, 1kh3:D, 1kor:A, 1kor:B, 1kor:C, 1kor:D
12 6k6s:A 443 41 0.0759 0.0271 0.2927 4.4 6k6s:B
13 8qec:A 1101 119 0.1519 0.0218 0.2017 4.9 9f40:A, 9f40:D, 9f40:B, 9f40:C, 9f41:C, 9f41:D, 9f41:A, 9f41:B, 8qeb:A, 8qed:A, 8qee:A, 6r4l:A
14 8olx:B 836 61 0.1076 0.0203 0.2787 6.2 8om5:B, 8om9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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