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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DLLQHVKFQSSNFENILTWDSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKSCDLTVETGDLQELYYARVTAVSAG
GRSATKMTDRFSSLQHTTLKPPDVTCISKVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGK
QREYEFFGLTPDTEFLGTIMICVPTWAKESAPYMCRVKTLPD

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3dgc:R 202 202 1.0000 1.0000 1.0000 2.20e-154
2 6weo:7 201 201 0.7871 0.7910 0.7910 2.51e-119 6weo:F, 6weo:M, 6weo:V
3 3ela:T 191 152 0.2178 0.2304 0.2895 2.38e-07
4 6weo:O 196 145 0.1634 0.1684 0.2276 0.006 6weo:K, 6weo:C
5 6e3k:E 213 112 0.1337 0.1268 0.2411 0.30 6e3k:I, 6e3l:E, 6e3l:I, 5eh1:A
6 8agd:A 1111 60 0.1089 0.0198 0.3667 3.9 8acq:A, 8acq:C, 8acq:B, 8ae1:A, 8ae1:B, 8ae1:C, 8agd:C, 8agd:B, 7zgy:A, 7zgy:C, 7zgy:B
7 4etl:A 277 22 0.0495 0.0361 0.4545 7.2 4esm:A, 4jpx:A, 4jpy:A, 1ltv:A, 1ltz:A, 4q3w:A, 4q3x:A, 4q3y:A, 4q3z:A, 3tcy:A, 3tk2:A, 3tk4:A
8 6mkk:A 282 39 0.0545 0.0390 0.2821 8.0 6boq:A, 6bor:A, 6bos:A, 6bot:A, 6bou:A, 6bov:A, 6bow:A, 7cd5:A, 7cd6:A, 5cfg:A, 1de8:B, 1de8:A, 1de9:A, 1de9:B, 1dew:B, 1dew:A, 5dff:A, 5dfh:A, 5dfi:A, 5dfj:A, 5dg0:A, 4iem:A, 4iem:B, 4iem:C, 4iem:D, 2isi:A, 2isi:B, 2isi:C, 4lnd:A, 4lnd:B, 4lnd:C, 7lpg:D, 7lph:D, 7lpi:D, 7lpj:D, 7mcr:A, 7mev:A, 6p93:A, 6p94:A, 4qh9:A, 4qhe:A, 7suv:B, 7svb:B, 7tc2:A, 7tc2:B, 7tc2:C, 7tc2:D, 7tr7:A, 7u50:K, 3u8u:A, 3u8u:B, 3u8u:C, 3u8u:D, 3u8u:E, 3u8u:F, 6w0q:A, 6w2p:A, 6w3l:B, 6w3n:B, 6w3q:B, 6w3u:B, 6w43:A, 6w4i:A, 6w4i:B, 6w4t:A, 6w4t:B, 5wn0:A, 5wn1:A, 5wn2:A, 5wn3:B, 5wn4:B, 5wn5:B, 5wn5:A
9 5l0t:A 356 94 0.1089 0.0618 0.2340 9.4 5l0r:A, 5l0s:A, 5l0u:A, 5l0v:A, 5ub5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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