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BioLiP
>protein
DLDDVARIRLVLARELETINEYEAYARASSNPEVRAFFQHLAAEEKEHVSEAVHMLRMLDSGQN

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7s5k:I 68 64 1.0000 0.9412 1.0000 1.38e-41 7s5c:A, 7s5c:B, 7s5c:E, 7s5c:F, 7s5c:G, 7s5c:H, 7s5c:I, 7s5c:J, 7s5c:C, 7s5c:D, 7s5k:A, 7s5k:B, 7s5k:F, 7s5k:E, 7s5k:G, 7s5k:H, 7s5k:J, 7s5k:C, 7s5k:D
2 5n5e:e 98 56 0.3750 0.2449 0.4286 2.97e-06 5n5e:K, 5n5e:A, 5n5e:Z, 5n5e:B, 5n5e:Y, 5n5e:C, 5n5e:H, 5n5e:D, 5n5e:J, 5n5e:E, 5n5e:W, 5n5e:F, 5n5e:N, 5n5e:G, 5n5e:I, 5n5e:L, 5n5e:V, 5n5e:M, 5n5e:O, 5n5e:P, 5n5e:R, 5n5e:Q, 5n5e:d, 5n5e:T, 5n5e:U, 5n5e:X, 5n5e:b, 5n5e:a, 5n5e:c
3 7s8t:J 83 56 0.3281 0.2530 0.3750 1.05e-05 7s8t:A, 7s8t:E, 7s8t:F, 7s8t:H, 7s8t:G, 7s8t:I
4 5da5:A 91 47 0.2812 0.1978 0.3830 6.64e-04 5da5:J, 5da5:B, 5da5:C, 5da5:D, 5da5:E, 5da5:F, 5da5:H, 5da5:G, 5da5:I, 5da5:K, 5da5:T, 5da5:L, 5da5:M, 5da5:N, 5da5:O, 5da5:P, 5da5:R, 5da5:Q, 5da5:S, 5da5:U, 5da5:d, 5da5:V, 5da5:W, 5da5:X, 5da5:Y, 5da5:Z, 5da5:b, 5da5:a, 5da5:c, 5l89:L, 5l89:M, 5l89:P, 5l89:R, 5l89:U, 5l89:V, 5l8b:A, 5l8b:J, 5l8b:B, 5l8b:C, 5l8b:D, 5l8b:E, 5l8b:H, 5l8b:I, 5l8b:K, 5l8b:T, 5l8b:L, 5l8b:M, 5l8b:O, 5l8b:N, 5l8b:P, 5l8b:R, 5l8b:Q, 5l8b:S, 5l8b:U, 5l8b:d, 5l8b:V, 5l8b:W, 5l8b:X, 5l8b:Y, 5l8b:b, 5l8b:c, 5l8f:B, 5l8f:C, 5l8f:D, 5l8f:F, 5l8f:H, 5l8f:I, 5l8f:G, 5l8g:A, 5l8g:J, 5l8g:B, 5l8g:C, 5l8g:E, 5l8g:D, 5l8g:I, 5l8g:G, 5l8g:F, 5l8g:H, 5l8g:K, 5l8g:L, 5l8g:M, 5l8g:N, 5l8g:O, 5l8g:P, 5l8g:R, 5l8g:S, 5l8g:Q, 5l8g:T, 5l8g:U, 5l8g:d, 5l8g:V, 5l8g:W, 5l8g:X, 5l8g:Y, 5l8g:b, 5l8g:Z, 5l8g:a, 5l8g:c, 6suw:A, 6suw:B, 6suw:C, 6suw:D, 6suw:E, 6suw:F, 6suw:G, 6suw:I, 6suw:H, 6suw:J, 6suw:K, 6suw:L, 6suw:M, 6suw:N, 6suw:O, 6suw:P, 6suw:Q, 6suw:R, 6suw:S, 6suw:T, 6suw:U, 6suw:V, 6suw:W, 6suw:X, 6suw:Y, 6suw:Z, 6suw:a, 6suw:b, 6suw:c, 6suw:d, 6sv1:A, 6sv1:B, 6sv1:C, 6sv1:D, 6sv1:E, 6sv1:F, 6sv1:G, 6sv1:H, 6sv1:I, 6sv1:J, 6sv1:K, 6sv1:L, 6sv1:M, 6sv1:N, 6sv1:O, 6sv1:P, 6sv1:Q, 6sv1:R, 6sv1:S, 6sv1:T, 6sv1:U, 6sv1:V, 6sv1:W, 6sv1:X, 6sv1:Y, 6sv1:Z, 6sv1:a, 6sv1:b, 6sv1:c, 6sv1:d
5 7o91:A 146 37 0.2188 0.0959 0.3784 0.24 1j30:A, 1j30:B, 7o8a:A, 7o8a:B, 7o8a:C, 7o8d:A, 7o8d:B, 7o90:A, 7o90:B, 7o91:B, 7o91:C, 7o93:A, 7o93:B, 7o99:A, 7o99:B, 7o9d:A, 7o9d:B, 7ppt:A, 7ppt:B, 7ppu:A, 7ppu:B, 7ppv:A, 7ppv:B
6 2oh3:A 149 42 0.2344 0.1007 0.3571 1.5
7 5vjs:A 196 41 0.1719 0.0561 0.2683 3.2 8d9p:A, 5vjt:A, 5vju:A
8 7oik:A 4426 29 0.1406 0.0020 0.3103 5.9 7oim:A, 6tax:A, 6tay:A
9 7a57:B 449 47 0.1250 0.0178 0.1702 6.2
10 7ef1:A 148 22 0.1562 0.0676 0.4545 6.4 7eez:A, 7ef0:A, 7ef0:B, 7ef1:B, 7ef2:A, 7ef2:B, 7ef3:A, 7ef3:B
11 7od9:B 129 30 0.1719 0.0853 0.3667 7.8 6ekg:Y, 6ekh:Y, 7od9:A
12 6zfz:A 446 28 0.1562 0.0224 0.3571 9.3 5cxv:A, 6wjc:A, 6zg4:A, 6zg9:A
13 8f7k:A 230 43 0.2500 0.0696 0.3721 9.9 8f7k:G, 8f7k:B, 8f7k:C, 8f7k:D, 8f7k:E, 8f7k:F, 8f7k:O, 8f7k:U, 8f7k:P, 8f7k:Q, 8f7k:R, 8f7k:S, 8f7k:T

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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