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BioLiP
>protein
DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQ

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6es3:K 72 66 1.0000 0.9167 1.0000 4.48e-43 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
2 1ahd:P 68 59 0.5606 0.5441 0.6271 6.23e-20
3 2r5z:A 75 57 0.5303 0.4667 0.6140 6.06e-19 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
4 1puf:A 77 59 0.5606 0.4805 0.6271 6.17e-19 2lp0:A
5 4uus:A 67 54 0.5000 0.4925 0.6111 4.67e-17 4uus:E
6 4cyc:A 66 54 0.5000 0.5000 0.6111 6.76e-17 1b8i:A
7 1b72:A 68 54 0.4697 0.4559 0.5741 2.13e-16
8 2me6:A 71 55 0.4545 0.4225 0.5455 6.14e-16
9 2h1k:B 60 54 0.4697 0.5167 0.5741 1.51e-15 2h1k:A
10 4rdu:D 62 59 0.4242 0.4516 0.4746 2.81e-15 4rdu:A, 4xrs:I, 4xrs:G
11 5zjr:A 64 56 0.4697 0.4844 0.5536 1.19e-14 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
12 2ld5:A 67 57 0.4545 0.4478 0.5263 3.46e-14
13 8eml:A 58 56 0.4394 0.5000 0.5179 3.75e-14 8eml:B
14 1ig7:A 58 57 0.4091 0.4655 0.4737 3.87e-14
15 1jgg:A 57 56 0.3939 0.4561 0.4643 6.19e-13 1jgg:B
16 5eea:G 63 57 0.3939 0.4127 0.4561 9.07e-13 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
17 8pna:A 67 53 0.3485 0.3433 0.4340 2.70e-12 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
18 3a01:F 61 59 0.4091 0.4426 0.4576 6.49e-12 3a01:B, 3lnq:A
19 6m3d:C 108 53 0.3485 0.2130 0.4340 2.72e-11 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
20 6m3d:C 108 54 0.3636 0.2222 0.4444 3.41e-11 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
21 1zq3:P 68 51 0.3788 0.3676 0.4902 6.39e-11
22 3rkq:A 58 55 0.3788 0.4310 0.4545 1.48e-10 3rkq:B
23 4qtr:C 57 54 0.3485 0.4035 0.4259 1.74e-10 4qtr:A, 4qtr:B, 4qtr:D
24 3a01:A 78 56 0.3939 0.3333 0.4643 8.23e-10 3a01:E
25 1nk2:P 77 61 0.3788 0.3247 0.4098 3.66e-09 1nk3:P
26 8osb:E 62 54 0.3636 0.3871 0.4444 7.62e-09
27 5flv:M 229 53 0.3485 0.1004 0.4340 1.95e-08 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
28 2lkx:A 68 54 0.3485 0.3382 0.4259 2.96e-08
29 1fjl:A 65 56 0.3333 0.3385 0.3929 7.08e-08 1fjl:B, 1fjl:C
30 4rbo:A 55 53 0.2879 0.3455 0.3585 1.36e-07 4rbo:D
31 3cmy:A 60 54 0.3485 0.3833 0.4259 3.34e-07
32 8ik5:C 67 60 0.3333 0.3284 0.3667 3.93e-07 8ike:C, 8ilw:C
33 6e8c:A 135 51 0.3182 0.1556 0.4118 2.21e-06 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 6e8c:A 135 51 0.2727 0.1333 0.3529 2.38e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 4egc:A 539 53 0.3030 0.0371 0.3774 2.87e-05
36 5hod:A 61 27 0.2121 0.2295 0.5185 9.86e-05 5hod:D
37 8ejo:A 56 52 0.2576 0.3036 0.3269 1.12e-04 8ejo:B, 8ejp:A, 8ejp:B
38 9b8u:B 66 47 0.2424 0.2424 0.3404 7.05e-04 9b8u:A, 9b8u:C, 9b8u:D
39 1le8:A 53 49 0.2121 0.2642 0.2857 0.005 1akh:A, 1yrn:A
40 8bx1:A 127 45 0.2424 0.1260 0.3556 0.020
41 3l1p:A 147 46 0.2424 0.1088 0.3478 0.023 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
42 1gt0:C 137 56 0.2576 0.1241 0.3036 0.025 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
43 8g8e:X 140 46 0.2424 0.1143 0.3478 0.029 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
44 1lfu:P 82 62 0.3182 0.2561 0.3387 0.029 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
45 7xrc:C 134 47 0.2273 0.1119 0.3191 0.048 2xsd:C
46 5wc9:A 136 26 0.1515 0.0735 0.3846 0.75 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
47 1akh:B 78 35 0.1970 0.1667 0.3714 2.8 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
48 3d1n:I 150 51 0.2273 0.1000 0.2941 3.0 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
49 1sh3:B 503 33 0.1515 0.0199 0.3030 3.3 3bsn:A, 3bso:A, 3h5x:A, 3h5y:A, 4lq3:A, 4lq9:A, 4nrt:A, 4qpx:A, 1sh3:A, 5tsn:A
50 8a5r:AAA 206 18 0.1667 0.0534 0.6111 5.1 8a5s:AAA, 3p7n:A, 3p7n:B
51 8z9h:C 748 66 0.2576 0.0227 0.2576 5.9 8z90:C, 8z9r:C
52 2cm6:A 149 45 0.2424 0.1074 0.3556 6.5 2cm5:A, 2cm6:B, 5lo8:A, 5lo8:B, 5lob:A, 5lob:B, 5lob:C, 5low:A, 5low:B, 5low:C, 5low:H, 5low:I, 5low:J
53 1mnm:C 77 33 0.1818 0.1558 0.3636 7.7 1mnm:D
54 8ftt:A 128 27 0.1515 0.0781 0.3704 8.1 8ftt:B
55 8z8x:C 400 66 0.2576 0.0425 0.2576 9.1
56 8tkp:D 614 20 0.1212 0.0130 0.4000 9.5
57 7pxc:D 457 40 0.1818 0.0263 0.3000 9.7 5kwa:A, 5kwa:B, 7ljf:A, 7ljf:B, 7ljf:C, 7px9:D, 7pxb:D, 7pxd:D
58 1nkw:D 178 35 0.1515 0.0562 0.2857 9.9 7a0r:D, 7a0s:D, 7a18:D, 3cf5:D, 3dll:D, 5dm6:D, 5dm7:D, 4io9:D, 4ioa:D, 4ioc:D, 5jvg:D, 5jvh:D, 3pio:D, 3pip:D, 4u67:D, 4v49:BD, 4v4g:BG, 4v4g:HG, 4v4g:DG, 4v4g:JG, 4v4g:FG, 4wfn:D, 2zjp:D, 2zjq:D, 2zjr:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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