Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWH

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hw2:B 69 64 1.0000 0.9275 1.0000 4.96e-44 8jzw:C, 8jzw:D, 8jzw:A, 8jzw:B, 5t1i:A, 5t1i:B
2 3q6s:B 67 63 0.8906 0.8507 0.9048 5.16e-40 3q6s:A, 3q6s:C, 3q6s:D, 5t1g:A
3 8uxq:A 170 64 0.8594 0.3235 0.8594 5.16e-37 3fdt:A
4 8uxq:A 170 44 0.1875 0.0706 0.2727 0.039 3fdt:A
5 3tzd:A 58 44 0.2031 0.2241 0.2955 7.63e-04 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
6 1guw:A 73 42 0.2031 0.1781 0.3095 0.002 6d07:A, 6d07:B, 6d08:A, 6d08:B
7 2rvn:A 83 44 0.1875 0.1446 0.2727 0.013
8 6zj3:Lf 170 60 0.2812 0.1059 0.3000 0.69
9 5ftw:A 255 35 0.2188 0.0549 0.4000 0.74
10 6asz:A 53 44 0.1719 0.2075 0.2500 0.93 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
11 5g3z:A 215 51 0.2188 0.0651 0.2745 1.2 5g40:A, 5g41:A
12 7dco:Q 292 31 0.1719 0.0377 0.3548 2.5 6j6g:Q, 6j6h:Q, 6j6n:Q, 6j6q:Q
13 5epk:A 54 44 0.1875 0.2222 0.2727 5.4 3h91:A, 3h91:B
14 1uuy:A 161 15 0.1406 0.0559 0.6000 9.1

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218