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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSAST
KSLQELFLAHILSPWG

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7scy:K 96 96 1.0000 1.0000 1.0000 1.31e-65 7scz:K
2 2k7f:A 109 21 0.1146 0.1009 0.5238 0.19
3 6nlx:C 335 79 0.2604 0.0746 0.3165 0.60 6nlx:B, 6nlx:D, 5ur0:A, 5ur0:B, 5ur0:C, 5ur0:D
4 6nys:B 679 48 0.1562 0.0221 0.3125 1.5 6nys:A
5 5xy3:B 400 35 0.1771 0.0425 0.4857 2.3
6 1soj:B 381 34 0.1250 0.0315 0.3529 2.3 1so2:A, 1so2:B, 1so2:C, 1so2:D, 1soj:A, 1soj:C, 1soj:D, 1soj:E, 1soj:F, 1soj:G, 1soj:H, 1soj:I, 1soj:J, 1soj:K, 1soj:L, 8syc:A, 8syc:D
7 7v94:A 1076 81 0.1771 0.0158 0.2099 2.7 7v93:A
8 8y6h:A 610 20 0.1042 0.0164 0.5000 4.4
9 8y6i:A 646 20 0.1042 0.0155 0.5000 4.4
10 5nlm:B 448 39 0.1354 0.0290 0.3333 5.8
11 5n5s:B 481 81 0.2083 0.0416 0.2469 5.8 5n5s:A, 5n5s:C, 5n5s:D
12 6su6:A 467 39 0.1354 0.0278 0.3333 5.9 5nlm:A, 6su6:B, 6su7:A
13 6qex:A 1182 20 0.1042 0.0085 0.5000 6.3 7a65:A, 7a69:A, 7a6c:A, 7a6e:A, 7a6f:A, 6c0v:A, 7o9w:A
14 7px0:B 1253 28 0.0833 0.0064 0.2857 6.5 7px0:A, 7px0:C, 7px0:D
15 6mu1:A 2149 62 0.1771 0.0079 0.2742 6.5 6mu1:C, 6mu1:B, 6mu1:D
16 8e5t:5 530 48 0.1458 0.0264 0.2917 8.1
17 5ow5:B 77 59 0.1250 0.1558 0.2034 8.3 5ow5:D
18 5e72:A 323 17 0.1042 0.0310 0.5882 8.3
19 4dna:A 461 49 0.1458 0.0304 0.2857 9.0 4dna:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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