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BioLiP
>protein
DKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLE

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6v7g:A 357 76 1.0000 0.2129 1.0000 2.53e-49 1dgr:X, 1dgr:V, 1dgr:N, 1dgw:X, 6v7j:A, 6v7j:B, 6v7j:C, 6v7l:A, 6v7l:B, 6v7l:C
2 2ea7:A 390 75 0.6053 0.1179 0.6133 3.82e-30 2ea7:B, 2ea7:C, 2eaa:A, 2eaa:B, 2eaa:C
3 5e1r:C 358 71 0.3816 0.0810 0.4085 6.13e-17 5e1r:A, 5e1r:B, 5e1r:D, 5e1r:E, 5e1r:F
4 6l4m:A 357 71 0.3289 0.0700 0.3521 1.24e-14
5 5vf5:A 370 70 0.3553 0.0730 0.3857 4.95e-14
6 5yjs:A 370 70 0.3158 0.0649 0.3429 7.87e-14 5yjs:B
7 6l4c:C 353 71 0.3816 0.0822 0.4085 8.92e-14
8 6l4c:B 373 70 0.3816 0.0777 0.4143 2.38e-13 6l4c:A
9 5cad:A 379 70 0.3421 0.0686 0.3714 2.57e-13
10 6km8:A 345 68 0.3026 0.0667 0.3382 4.63e-12
11 4lej:A 355 72 0.3026 0.0648 0.3194 4.47e-10
12 5fq0:C 109 40 0.1842 0.1284 0.3500 0.031
13 5fpx:B 107 40 0.1579 0.1121 0.3000 0.79 5fpx:A
14 4bu2:A 379 48 0.1842 0.0369 0.2917 1.2
15 2z1u:A 335 21 0.1316 0.0299 0.4762 6.1
16 2et1:A 201 84 0.2500 0.0945 0.2262 8.0 2et7:A, 2ete:A, 2ete:B, 1fi2:A
17 3fv5:B 181 30 0.1184 0.0497 0.3000 9.1 3fv5:A, 1s14:A, 1s14:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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