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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DHDAEVLDSIMDRLHEPLYEKDTFDPNEVLAENKQLYEEFLLQEISEPKVDNLVRSGDPLAGKAKGTILSLVRNSDLEDI
ISSIQQLEEEYNKNFGYPYTFLNDEEFTDEFKDGIKSILPKDRVVEFGTIGPDNWNMPDSIDRERYDQEMDKMSKENIQY
AEVESYHNMCRFYSKEFYHHPLLSKYKYVWRLEPNVNFYCKINYDVFQFMNKNDKIYGFVLNLYDSPQTIETLWTSTMDF
VEEHPNYLNVNGAFAWLKDNSQNPKNYDYTQGYSTCHFWTNFEIVDLDFLRSEPYEKYMQYLEEKGGFYYERWGDAPVRS
LALALFADKSSIHWFRDIGYHHTPYTNCPTCPADSDRCNGNCVPGKFTPWSDLDNQNCQATWIRHSMSEEELEMY

The query sequence (length=395) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5a07:A 395 395 1.0000 1.0000 1.0000 0.0 5a07:B, 5a08:B
2 7bop:C 372 352 0.3797 0.4032 0.4261 3.47e-105 7bop:A, 7bop:B, 7bop:D, 7bop:E, 7bop:F
3 1s4o:A 335 291 0.3215 0.3791 0.4364 6.96e-87 1s4o:B, 1s4p:A, 1s4p:B
4 2c1d:B 137 42 0.0405 0.1168 0.3810 0.24 2c1d:D, 2c1d:F, 2c1d:H
5 7pug:A 829 109 0.0709 0.0338 0.2569 2.4 7pxq:A
6 8c79:A 478 123 0.0810 0.0669 0.2602 2.5 8c79:B
7 8olx:B 836 109 0.0658 0.0311 0.2385 3.1 8om5:B, 8om9:B
8 3thw:B 860 109 0.0658 0.0302 0.2385 3.1 8oma:B, 8omo:B, 8omq:B, 3thx:B, 3thy:B, 3thz:B
9 7f09:C 67 39 0.0354 0.2090 0.3590 6.7
10 6ky3:A 353 65 0.0506 0.0567 0.3077 8.2
11 2g37:B 300 54 0.0380 0.0500 0.2778 8.6 2ekg:A, 2ekg:B, 2g37:A, 5m42:A
12 7oui:H 60 37 0.0329 0.2167 0.3514 8.9 3jcu:H, 3jcu:h, 5mdx:H, 5mdx:h, 7oui:h
13 8t41:A 859 46 0.0430 0.0198 0.3696 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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