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BioLiP
>protein
DGKRAINYQILKNKGLTPKRNKDNRNSRVKKRKKYQKAQKKLKSVRA

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aju:UC 86 47 1.0000 0.5465 1.0000 3.86e-26 6zqd:UC, 6zqe:UC
2 7suk:NB 142 47 1.0000 0.3310 1.0000 5.02e-26 7ajt:UC, 7d5s:5H, 7d5t:5H, 7d63:5H, 6ke6:5H, 6lqp:5H, 6lqq:5H, 6lqr:5H, 6lqs:5H, 6lqt:5H, 6lqu:5H, 6lqv:5H, 5wlc:NB, 7wtl:UC, 6zqa:UC, 6zqb:UC, 6zqc:UC, 6zqf:UC, 6zqg:UC
3 7d4i:5H 95 46 0.9787 0.4842 1.0000 4.67e-25
4 5oql:C 74 46 0.6809 0.4324 0.6957 4.15e-15 6rxt:UC, 6rxu:UC, 6rxv:UC, 6rxx:UC, 6rxy:UC, 6rxz:UC
5 7mqa:NB 103 37 0.4894 0.2233 0.6216 1.02e-09 7mq8:NB, 7mq9:NB
6 8i22:A 530 26 0.2128 0.0189 0.3846 7.8 8i22:F, 8i22:B, 8i22:C, 8i22:D, 8i22:E, 8i3i:A, 8i3i:D, 8i3i:B, 8i3i:C, 8i49:A, 8i49:D, 8i49:E, 8i49:F, 8i49:C, 8i49:B, 8i51:A, 8i51:B, 8i51:C, 8i51:D, 8i51:E, 8i51:F, 8i6m:A, 8i6m:F, 8i6m:D, 8i6m:C, 8i6m:B, 8i6m:E, 8i8d:A, 8i8d:B, 8i8d:C, 8i8d:D, 8i8d:E, 8i8d:F, 8i8e:F, 8i8e:D, 8i8e:A, 8i8e:B, 8i8e:C, 8i8e:E, 8jyl:A, 8jyl:B, 8jyl:C, 8jyl:D, 8jyl:E, 8jyl:F, 8jyu:A, 8jyu:D, 8jyu:B, 8jyu:C, 8jyu:E, 8jyu:F
7 1jv1:A 490 27 0.1489 0.0143 0.2593 8.2 1jv1:B, 1jv3:A, 1jv3:B, 1jvd:A, 1jvd:B, 1jvg:A, 1jvg:B, 6z2f:A, 6z2f:B
8 2v6g:A 364 22 0.1915 0.0247 0.4091 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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