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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DFAAKCAGFKTSLKLPNTKVWFTEHVPAGKNITFPDNHPTCTPKSTITDVEICRVAMFVTTGPKSNLTLEAWLPSNWTGR
FLSTGNGGMAGCIQYDDVAYGAGFGFATVGANNGHNGTSAVSMYKNSGVVEDYVYRSVHTGTVLGKELTKKFYGKKHTKS
YYLGCSTGGRQGWKEAQSFPDDFDGIVAGAPAMRFNGLQSRSGSFWGITGPPGAPTHLSPEEWAMVQKNVLVQCDEPLDG
VADGILEDPNLCQYRPEALVCSKGQTKNCLTGPQIETVRKVFGPLYGNNGTYIYPRIPPGADQGFGFAIGEQPFPYSTEW
FQYVIWNDTKWDPNTIGPNDYQKASEVNPFNVETWEGDLSKFRKRGSKIIHWHGLEDGLISSDNSMEYYNHVSATMGLSN
TELDEFYRYFRVSGCGHCSGGIGANRIGNNRANLGGKEAKNNVLLALVKWVEEGQAPETITGVRYVNGATTGKVEVERRH
CRYPYRNVWDRKGNYKNPDSWKCELPLE

The query sequence (length=508) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fat:A 508 508 1.0000 1.0000 1.0000 0.0 8bhh:B, 8bhh:A, 6fat:B
2 6g21:A 504 504 0.5217 0.5258 0.5258 0.0 6g21:B
3 3wmt:A 503 506 0.4862 0.4911 0.4881 0.0 3wmt:B
4 6qz4:A 568 510 0.2756 0.2465 0.2745 1.89e-40 8ekg:A, 8ekg:B, 8ekg:C, 8ekg:E, 8ekg:D, 8ekg:F, 6jtt:A, 6jtt:B, 6jtt:C, 6jtu:A, 6jtu:B, 6jtu:C, 6qg9:A, 6qg9:B, 6qg9:C, 6qg9:D, 6qg9:E, 6qg9:F, 6qg9:G, 6qg9:H, 6qg9:I, 6qg9:J, 6qga:A, 6qga:B, 6qga:C, 6qga:D, 6qga:E, 6qga:F, 6qgb:A, 6qgb:B, 6qgb:C, 6qgb:D, 6qgb:E, 6qgb:F, 6qz1:A, 6qz2:A, 6qz2:B, 6qz2:C, 6qz2:D, 6qz2:E, 6qz2:F, 6qz2:G, 6qz2:H, 6qz2:I, 6qz2:J, 6qz3:A, 6qz4:B
5 7k4o:A 554 501 0.2520 0.2310 0.2555 1.63e-32
6 6u5w:A 1435 79 0.0472 0.0167 0.3038 1.1
7 6ql9:D 1765 79 0.0453 0.0130 0.2911 4.5 3hmj:A, 3hmj:B, 3hmj:C, 8prv:A, 8prv:B, 8prw:A, 8prw:B, 8prw:C, 8prw:D, 8prw:E, 8prw:F, 8ps1:A, 6ql6:F, 6ql6:E, 6ql6:D, 6ql6:C, 6ql6:B, 6ql6:A, 6ql9:F, 6ql9:A, 6ql9:E, 6ql9:B, 6ql9:C, 6ta1:A, 6ta1:B, 6ta1:D, 6ta1:K, 6ta1:F, 6ta1:I, 6u5u:A, 2vkz:A, 2vkz:B, 2vkz:C, 2wat:A, 2wat:B, 2wat:C, 2wat:D, 2wat:E, 2wat:F
8 6qe2:A 257 35 0.0256 0.0506 0.3714 4.9 6qe2:B
9 4c0b:B 430 88 0.0512 0.0605 0.2955 5.0 4c0b:A, 4c0h:A, 2npi:A, 2npi:B, 4oi4:A, 4oi4:C
10 2q1f:A 991 108 0.0453 0.0232 0.2130 5.5 2q1f:B
11 4pyh:A 293 48 0.0354 0.0614 0.3750 7.3
12 7lu9:i 228 37 0.0256 0.0570 0.3514 7.3 7lu9:l, 7lu9:p, 7lu9:q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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