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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DEPFSGAKKLRHLLENTDELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDP
FGPPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLI
ARTDALQSLGYEECIERLRAARDEGADVGLLEGFRSKEQAAAAVAALAPWPLLLNSVENGHSPLITVEEAKAMGFRIMIF
SFATLAPAYAAIRETLVRLRDHGVVGTPDGITPVRLFEVCGLQDAMEVDNGAGGKAF

The query sequence (length=297) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3m0j:A 297 297 1.0000 1.0000 1.0000 0.0 3lye:A, 3m0k:A
2 3fa3:B 302 293 0.5960 0.5861 0.6041 1.82e-122 3fa3:A, 3fa3:C, 3fa3:D, 3fa3:E, 3fa3:F, 3fa3:G, 3fa3:H, 3fa3:I, 3fa3:J, 3fa3:K, 3fa3:L, 3fa3:M, 3fa3:N, 3fa3:O, 3fa3:P, 3fa4:A, 3fa4:B, 3fa4:C, 3fa4:D, 3fa4:E, 3fa4:F, 3fa4:G, 3fa4:H, 3fa4:I, 3fa4:J, 3fa4:K, 3fa4:L
3 4iqd:A 290 290 0.3266 0.3345 0.3345 3.00e-43 4iqd:B
4 1mum:A 289 263 0.3098 0.3183 0.3498 4.70e-35 1o5q:A, 1o5q:B, 1o5q:C, 1o5q:D, 1xg3:A, 1xg3:B, 1xg3:C, 1xg3:D
5 1zlp:B 285 274 0.2929 0.3053 0.3175 8.85e-28 1zlp:A
6 6t4v:C 277 244 0.2694 0.2888 0.3279 1.15e-26 6t4v:A, 6t4v:B, 6t4v:D, 6t5m:C, 6t5m:A, 6t5m:D, 6t5m:B
7 6t4v:C 277 40 0.0572 0.0614 0.4250 3.0 6t4v:A, 6t4v:B, 6t4v:D, 6t5m:C, 6t5m:A, 6t5m:D, 6t5m:B
8 1m1b:A 291 288 0.2593 0.2646 0.2674 1.25e-17 1m1b:B, 1pym:A, 1pym:B
9 3b8i:A 284 234 0.2424 0.2535 0.3077 9.26e-17 3b8i:B, 3b8i:C, 3b8i:D, 3b8i:E, 3b8i:F
10 5e9h:A 518 194 0.2155 0.1236 0.3299 1.19e-14
11 7rbx:C 425 183 0.1751 0.1224 0.2842 2.52e-14 7rbx:A, 7rbx:B, 7rbx:D
12 6lrt:A 423 180 0.1751 0.1229 0.2889 4.55e-14 6lrt:D, 6lrt:G, 6lrt:J, 6lrt:M, 6lrt:P, 6lrt:S, 6lrt:V
13 6edw:C 724 188 0.1919 0.0787 0.3032 5.92e-13 6ee1:A, 6ee1:C
14 5unc:A 289 162 0.1785 0.1834 0.3272 5.94e-13 5unc:B, 5unc:C, 5unc:D
15 2dua:A 283 270 0.2492 0.2615 0.2741 7.21e-13 2hjp:A
16 6edw:B 746 188 0.1919 0.0764 0.3032 7.40e-13 6edw:A, 6edw:D, 6edz:A, 6edz:B, 6edz:D, 6ee1:B, 6ee1:D
17 7ebe:A 544 86 0.1178 0.0643 0.4070 7.67e-13 7ebe:B, 7ebe:C, 7ebe:D
18 5e9g:B 525 92 0.1313 0.0743 0.4239 8.47e-13 5e9f:A, 5e9g:A
19 5e9g:D 486 92 0.1313 0.0802 0.4239 8.93e-13
20 8z1r:B 516 83 0.1145 0.0659 0.4096 1.44e-11 8z1r:A
21 6c4a:A 428 186 0.1852 0.1285 0.2957 5.55e-11 6c4a:B, 6c4a:C, 6c4a:D, 6c4a:E, 6c4a:F, 6c4a:G, 6c4a:H, 6c4c:A, 6c4c:B, 6c4c:C, 6c4c:D, 6c4c:E, 6c4c:F, 6c4c:G, 6c4c:H, 7cp1:A, 7cp1:B, 5dql:A, 5dql:B, 5dql:C, 5dql:D, 1f61:A, 1f61:B, 1f8i:A, 1f8i:B, 1f8i:C, 1f8i:D, 1f8m:A, 1f8m:B, 1f8m:C, 1f8m:D, 7rb1:A, 7rb1:B, 7rb1:C, 7rb1:D, 6vb9:A, 6vb9:B, 6vb9:C, 6vb9:D, 6wsi:A, 6wsi:B, 6wsi:C, 6wsi:D, 6xpp:A, 6xpp:B, 6xpp:C, 6xpp:D
22 7cmy:C 417 180 0.1616 0.1151 0.2667 9.59e-11
23 4lsb:B 278 220 0.2357 0.2518 0.3182 5.45e-10 4lsb:A
24 1igw:C 416 192 0.1852 0.1322 0.2865 1.04e-09 1igw:B, 1igw:D
25 6edz:C 723 187 0.1818 0.0747 0.2888 2.06e-08
26 2ze3:A 275 184 0.2054 0.2218 0.3315 6.64e-08
27 6g1o:A 486 105 0.1145 0.0700 0.3238 1.27e-07
28 5e9f:B 501 91 0.1145 0.0679 0.3736 2.93e-07 5e9f:C, 5e9g:C
29 5e9f:D 453 91 0.1145 0.0751 0.3736 3.43e-07
30 1igw:A 396 192 0.1785 0.1338 0.2760 6.86e-06
31 1m8k:A 169 107 0.1010 0.1775 0.2804 0.36 1ej2:A, 1hyb:A, 1m8f:A, 1m8g:A, 1m8j:A, 1m8k:B, 1m8k:C, 4yp5:A, 4yp5:B, 4yp5:C, 4yp6:A, 4yp6:B, 4yp6:C, 4yp7:A, 4yp7:B, 4yp7:C
32 2ww2:B 737 69 0.0572 0.0231 0.2464 4.9
33 6grh:C 266 57 0.0640 0.0714 0.3333 5.0 6gos:C, 6grg:C, 6gri:C
34 4xfm:A 400 43 0.0640 0.0475 0.4419 6.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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