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BioLiP
>protein
DEALEKDLNDVSKEINLMLSTYAKLLSERAAVDASYIDEIDELFKEANAIENALIQKREELRQRFTAIANTLHR

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hk9:B 78 74 1.0000 0.9487 1.0000 1.24e-47 6hk9:A
2 7sq0:A 306 60 0.2568 0.0621 0.3167 0.71 7sq0:B
3 3idq:A 272 53 0.1892 0.0515 0.2642 1.4
4 7nrc:So 347 50 0.2297 0.0490 0.3400 2.4
5 2h1n:A 566 45 0.1622 0.0212 0.2667 2.8 2h1j:A, 2h1j:B, 2h1n:B
6 7spz:A 328 52 0.2162 0.0488 0.3077 2.9 7spy:A
7 5kxq:A 327 38 0.1892 0.0428 0.3684 3.0 5kxq:B, 5kxq:C, 5kxq:D
8 5ky2:A 355 38 0.1892 0.0394 0.3684 3.0 5kxh:A, 5ky0:A, 5ky3:A, 5ky4:A, 5ky5:A, 5ky7:A, 5ky8:A, 5ky9:A, 5uxh:A, 5uxh:B
9 1uf2:A 967 41 0.1622 0.0124 0.2927 4.4
10 2xgj:B 777 28 0.1757 0.0167 0.4643 8.6
11 6fsz:MM 978 28 0.1757 0.0133 0.4643 8.8 7ajt:EN, 7aju:EN, 6ft6:MM, 5ooq:A, 5ooq:B, 2xgj:A
12 1xjq:B 590 54 0.2703 0.0339 0.3704 9.1 8i1m:A, 2ofw:A, 2ofw:B, 2ofw:C, 2ofw:D, 2ofw:E, 2ofw:F, 2ofw:G, 2ofw:H, 2ofx:A, 2ofx:B, 2pey:A, 2pez:A, 2pez:B, 2qjf:A, 2qjf:B, 1x6v:B, 1xnj:B
13 1xjq:A 563 54 0.2703 0.0355 0.3704 9.2 2pey:B, 1xnj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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