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BioLiP
>protein
DEAAELMQQVKVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGG

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6evq:A 70 70 1.0000 1.0000 1.0000 9.69e-46 6evq:B, 3gjo:A, 3gjo:B, 3gjo:C, 3gjo:D, 5n74:A, 5n74:B, 5n74:C, 5n74:D, 5n74:E, 5n74:F, 5n74:G, 5n74:H, 7olg:A, 7olg:B
2 5m9e:B 71 49 0.3143 0.3099 0.4490 5.11e-07 5m9e:A, 5m9e:C, 5m9e:D
3 1qs0:A 407 31 0.1857 0.0319 0.4194 0.62
4 2wty:B 97 27 0.1857 0.1340 0.4815 0.95 4auw:A, 4auw:B, 4auw:E, 4auw:F, 2wt7:B, 2wty:A
5 6k02:B 269 45 0.1857 0.0483 0.2889 1.2 6k02:A
6 4eot:A 92 27 0.2000 0.1522 0.5185 1.3 4eot:B
7 1htw:A 158 19 0.1571 0.0696 0.5789 2.3 1htw:B, 1htw:C
8 1y7i:B 262 37 0.1714 0.0458 0.3243 2.8 1xkl:A, 1xkl:B, 1xkl:C, 1xkl:D, 1y7i:A
9 2dq0:A 447 50 0.2000 0.0313 0.2800 4.0 2dq0:B, 2zr2:A, 2zr2:B
10 7zm7:R 98 53 0.2143 0.1531 0.2830 4.4 7zm8:R, 7zmb:R, 7zme:R, 7zmg:R, 7zmh:R
11 1a05:A 357 63 0.2571 0.0504 0.2857 8.5 1a05:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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