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BioLiP
>protein
DDPVKVRKWKHVQMEKIRRINTKEAFERLIKSVRTPPKENGKRIPKHILLTCVMNDIKSIRSANEALQHILDD

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7xq5:B 73 73 1.0000 1.0000 1.0000 2.87e-49
2 7zy4:B 306 40 0.1644 0.0392 0.3000 1.7 7zy4:A
3 6lu0:A 937 30 0.1507 0.0117 0.3667 1.9
4 7s0z:C 179 16 0.1233 0.0503 0.5625 2.9 2fn4:A, 7s0z:D
5 6ltr:A 1037 28 0.1507 0.0106 0.3929 5.8 6ltu:A
6 4z5q:A 363 54 0.1781 0.0358 0.2407 6.7
7 8dh5:M 740 46 0.1918 0.0189 0.3043 8.5
8 8dh3:E 825 46 0.1918 0.0170 0.3043 9.6 8dh4:M, 8dh5:E
9 8cbc:A 455 37 0.1644 0.0264 0.3243 9.6 8c48:A, 8c48:B, 8cbc:B, 7o0e:A, 7o0e:G, 8p67:A, 8p67:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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