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BioLiP
>protein
DDLAQTKAIKDQLQKYIRELEQANDDLERAKRA

The query sequence (length=33) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7e1t:C 33 33 1.0000 1.0000 1.0000 1.35e-16
2 8any:O 154 24 0.3636 0.0779 0.5000 3.0 7a5f:O3, 7a5g:O3, 7a5h:O, 7a5i:O3, 7a5j:O, 7a5k:O3, 4ce4:R, 6i9r:O, 3iy9:S, 3j7y:O, 3j9m:O, 8k2a:LQ, 8k2b:LQ, 7l08:O, 7l20:O, 6nu2:O, 6nu3:O, 7o9k:O, 7o9m:O, 7odr:O, 7ods:O, 7odt:O, 7of0:O, 7of2:O, 7of3:O, 7of4:O, 7of5:O, 7of6:O, 7of7:O, 7og4:XO, 7oi6:O, 7oi7:O, 7oi8:O, 7oi9:O, 7oia:O, 7oib:O, 7oic:O, 7oid:O, 7oie:O, 8oir:BV, 8oit:BV, 5ool:O, 5oom:O, 7pd3:O, 8pk0:O, 7po4:O, 7qh6:O, 7qh7:O, 7qi4:O, 7qi5:O, 7qi6:O, 8qsj:O, 8qu1:O, 8qu5:O, 6vlz:O, 6vmi:O, 8xt0:LQ, 8xt1:LQ, 8xt2:LQ, 8xt3:LQ, 6zm5:O, 6zm6:O, 6zs9:XO, 6zsa:XO, 6zsb:XO, 6zsc:XO, 6zsd:XO, 6zse:XO, 6zsg:XO
3 4m1m:A 1188 15 0.2727 0.0076 0.6000 3.8 8avy:A, 6fn1:A, 3g60:A, 3g60:B, 3g61:A, 3g61:B, 5koy:A, 5koy:B, 4m1m:B, 4m2s:A, 4m2s:B, 4m2t:A, 4m2t:B, 7otg:A, 8pee:A, 6q81:A, 4q9i:A, 4q9j:A, 4q9k:A, 4q9l:A, 6qee:A, 6ujn:A, 6ujp:A, 6ujr:A, 6ujs:A, 6ujt:A, 6ujw:A, 4xwk:A, 7zk4:A, 7zk5:A, 7zk6:A, 7zk7:A, 7zk8:A, 7zk9:A, 7zka:A, 7zkb:A
4 8y6h:A 610 15 0.2727 0.0148 0.6000 5.2
5 8y6i:A 646 15 0.2727 0.0139 0.6000 5.2
6 7z0s:E 532 20 0.2121 0.0132 0.3500 5.7 7z0t:E
7 6qex:A 1182 15 0.2727 0.0076 0.6000 5.9 7a65:A, 7a69:A, 7a6c:A, 7a6e:A, 7a6f:A, 6c0v:A, 7o9w:A
8 9azb:A 396 27 0.2424 0.0202 0.2963 6.3 9aza:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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