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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DALHDQASALFKPIPEQVTELRGQPISEQQRELGKKLFFDPRLSRSHVLSCNTCHNVGTGGADNVPTSVGHGWQKGPRNS
PTVFNAVFNAAQFWDGRAKDLGEQAKGPIQNSVEMHSTPQLVEQTLGSIPEYVDAFRKAFPKAGKPVSFDNMALAIEAYE
ATLVTPDSPFDLYLKGDDKALDAQQKKGLKAFMDSGCSACHNGINLGGQAYFPFGLVKKPDASVLPSGDKGRFAVTKTQS
DEYVFRAAPLRNVALTAPYFHSGQVWELKDAVAIMGNAQLGKQLAPDDVENIVAFLHSLSGKQPRVEYPLLPASTETTPR
PAE

The query sequence (length=323) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2vhd:A 323 323 1.0000 1.0000 1.0000 0.0 1eb7:A, 2vhd:B
2 3hq6:A 324 321 0.6594 0.6574 0.6636 1.62e-162 3hq6:B, 3hq8:A, 3hq8:B, 3hq9:A, 3hq9:B
3 1nml:A 316 323 0.6254 0.6392 0.6254 1.40e-155 1rz5:A, 1rz6:A
4 2c1v:A 335 327 0.6130 0.5910 0.6055 6.09e-155 2c1u:A, 2c1u:B, 2c1u:C, 2c1u:D, 2c1v:B
5 4aam:A 324 318 0.5851 0.5833 0.5943 1.28e-144 4aal:A, 4aal:B, 4aan:A, 4aao:B
6 3hq7:A 304 321 0.6006 0.6382 0.6044 1.31e-139
7 1zzh:B 308 320 0.5697 0.5974 0.5750 2.85e-136 1zzh:A, 1zzh:C, 1zzh:D
8 4aao:A 303 318 0.5449 0.5809 0.5535 3.71e-126
9 6fu3:A 329 326 0.4892 0.4802 0.4847 7.96e-104 6fu3:B, 6qkn:A, 6qkn:B, 7zs8:A, 7zs8:B
10 3o5c:A 308 298 0.4551 0.4773 0.4933 5.87e-100 3o5c:B, 3o5c:C, 3o5c:D
11 1iqc:A 308 296 0.4458 0.4675 0.4865 1.52e-96 1iqc:B, 1iqc:C, 1iqc:D
12 6e1c:A 350 280 0.2601 0.2400 0.3000 2.22e-32
13 6e1c:B 323 275 0.2415 0.2415 0.2836 3.51e-26
14 4fa4:B 359 291 0.2539 0.2284 0.2818 7.89e-17 4fa1:A, 4fa1:B, 4fa4:A, 4fa5:A, 4fa5:B, 4fa9:A, 4fa9:B, 4fan:A, 4fan:B, 4fav:A, 4fav:B, 4fb1:A, 4fb1:B, 4k3i:A, 4k3i:B, 4l1q:A, 4l1q:B, 4l3g:A, 4l3g:B, 4l3h:A, 4l3h:B, 3l4m:A, 3l4m:B, 3l4o:A, 3l4o:B, 4o1q:A, 4o1q:B, 3orv:A, 3orv:B, 3pxs:A, 3pxs:B, 3pxt:A, 3pxt:B, 3pxw:A, 3pxw:B, 3rlm:A, 3rlm:B, 3rmz:A, 3rmz:B, 3rn0:A, 3rn0:B, 3rn1:A, 3rn1:B, 3sjl:A, 3sjl:B, 3sle:A, 3sle:B, 3svw:A, 3svw:B, 3sws:A, 3sws:B, 3sxt:A, 3sxt:B, 4y5r:A, 4y5r:B
15 6v59:A 419 333 0.2632 0.2029 0.2553 1.26e-08 6nx0:A, 6v59:B
16 7zs0:A 278 185 0.1455 0.1691 0.2541 1.1 7zs1:A, 7zs2:A
17 7dm1:B 334 64 0.0681 0.0659 0.3438 1.2 7dm1:A, 7dm2:A, 1pc3:A, 1pc3:B
18 1qzu:A 160 45 0.0464 0.0938 0.3333 1.3 1qzu:B, 1qzu:C, 1qzu:D
19 6xtf:D 96 45 0.0464 0.1562 0.3333 2.3 6xtf:C
20 6f3h:B 790 24 0.0372 0.0152 0.5000 2.7 6f3h:A
21 3t6d:C 334 26 0.0248 0.0240 0.3077 4.5 4ac5:C, 4cas:A, 3d38:C, 1dxr:C, 6et5:C, 3g7f:C, 2i5n:C, 2jbl:C, 5m7j:A, 5m7k:A, 5m7l:A, 5nj4:C, 5o4c:C, 5o64:C, 1prc:C, 2prc:C, 3prc:C, 5prc:C, 6prc:C, 7prc:C, 7q7p:CCC, 7q7q:CCC, 1r2c:C, 3t6e:C, 1vrn:C, 2wjm:C, 2wjn:C, 2x5u:C, 2x5v:C, 6zhw:C, 6zi4:C, 6zi5:C, 6zi6:C, 6zi9:C, 6zia:C, 6zid:C
22 5auk:A 96 53 0.0495 0.1667 0.3019 4.9 1dox:A, 1doy:A, 2kaj:A, 1off:A, 2pvg:C, 2pvo:D
23 1a70:A 97 53 0.0495 0.1649 0.3019 5.1
24 7f76:B 173 31 0.0372 0.0694 0.3871 6.0 7f76:A
25 4f1m:A 278 83 0.0650 0.0755 0.2530 6.9 4f0f:A, 4f1o:A, 4f1t:A, 4yzm:A, 4yzm:B, 4yzn:A
26 1a3w:A 492 43 0.0526 0.0346 0.3953 6.9 1a3w:B, 1a3x:A, 1a3x:B
27 3oss:D 157 48 0.0464 0.0955 0.3125 7.0
28 6uzi:C 470 48 0.0495 0.0340 0.3333 8.0 6uzi:A, 6uzi:B, 6uzi:D
29 4zhp:A 98 53 0.0495 0.1633 0.3019 8.3
30 5i8o:H 219 164 0.1269 0.1872 0.2500 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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