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BioLiP
>protein
DAGTVDFYGQLRTELKFLEDKDPTIGSGSSRAGVDANYTVNDSLALQGKVEFALKDSGDMYVRNHILGVKTNFGKFSFGK
QWTTSDDVYGADYSYFFGGTGLRYGTLSDALHDSQVKYVYEADSFWVKAGYGFPEDNAKQELAELYVGATFGDLAVHAGG
GQNRDKAFKVGSNTVGTTTTDIKADVTNSYFEVTGEYTIGDALIGVTYYNAELDVENNPLVIDEDAISVAGTYKVADKTK
LYAGYEYVMQEANTGADEDGTLVYLGVEYKFASWARVYAEYGYGDGTTDSANNFGIGARYYW

The query sequence (length=302) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ehd:A 322 319 0.9901 0.9286 0.9373 0.0 6ehe:A, 6ehf:A
2 8pyz:F 347 87 0.0828 0.0720 0.2874 1.4 5nup:A, 5nup:B, 5nup:C, 5o79:C, 5o79:A, 5o79:B, 8pyz:E, 8pyz:C, 7q3t:A, 7q3t:B, 7q3t:C, 7q3t:E, 7q3t:D, 7q3t:F, 6rck:C, 6rd3:A, 6rd3:B, 6rd3:C, 6rd3:D, 6rd3:E, 6rd3:F, 7szi:C
3 5ymr:B 798 87 0.0927 0.0351 0.3218 1.8 5ymr:D, 5ymr:C, 5ymr:A
4 5w7c:C 420 60 0.0530 0.0381 0.2667 2.0 5w78:B, 5w7c:D
5 6km9:B 845 88 0.0762 0.0272 0.2614 3.5 6km9:A, 6kma:A, 6kma:B, 6kma:C, 6kma:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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