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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CVREVCRWSSWYNGHRPEPGLGGGDFETFENLRQRGYQVCPVLADIECRAAQLPDMPLEELGQQVDCDRMRGLMCANSQQ
SPPLCHDYELRVLCCEYVPC

The query sequence (length=100) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8oer:I 100 100 1.0000 1.0000 1.0000 3.39e-71 8oer:J, 8oes:I, 8oes:J, 8oes:K, 8oes:L, 8oes:M, 8oes:N
2 8ov0:A 110 96 0.4000 0.3636 0.4167 2.35e-21
3 8s03:A 100 100 0.3700 0.3700 0.3700 1.62e-16
4 7a5o:A 1205 94 0.3900 0.0324 0.4149 1.57e-15 7a5o:B, 7a5o:C, 7a5o:D, 7a5o:E, 7a5o:F, 7a5o:G, 7a5o:H, 7a5o:I, 7a5o:J, 8ck2:A, 7pov:A, 7pov:B, 7pov:C, 7pov:D, 7pp6:A, 7pp6:B, 7pp6:C, 7pp6:D, 7pp6:E, 7pp6:G, 7prl:A, 6rbf:A, 6rbf:B, 6rbf:C, 6rbf:D, 6tm2:A, 6tm2:B, 6tm2:C, 6tm2:D, 6tm2:E, 6tm2:F, 6tm6:A
5 1tll:A 630 67 0.1900 0.0302 0.2836 1.3 1f20:A, 1tll:B
6 5wd6:A 195 31 0.1100 0.0564 0.3548 2.7 6o1t:A, 6o1t:B
7 8c6j:D 123 19 0.0900 0.0732 0.4737 3.6 9fmd:1, 6icz:X, 6qdv:D, 7w5a:2, 7w5b:2, 5xjc:X
8 4er0:A 315 33 0.1300 0.0413 0.3939 4.6
9 3uwp:A 341 33 0.1300 0.0381 0.3939 4.6 7bwd:K, 5drt:A, 5drt:B, 5dry:A, 5dry:B, 5dsx:A, 5dsx:B, 5dt2:A, 5dt2:B, 5dtm:A, 5dtm:B, 5dtq:A, 5dtq:B, 5dtr:A, 5dtr:B, 4ek9:A, 4ekg:A, 4eki:A, 4eqz:A, 4er3:A, 4er5:A, 4er6:A, 4er7:A, 4hra:A, 6in3:A, 6j99:K, 6jm9:X, 6jma:X, 5juw:A, 5mvs:A, 5mvs:B, 5mw3:A, 5mw3:B, 5mw4:A, 5mw4:B, 6nj9:K, 6nj9:M, 6nqa:K, 1nw3:A, 6o96:K, 3qow:A, 3qox:A, 3sr4:A, 3sx0:A, 6te6:A, 6te6:B, 6tel:A, 6tel:B, 6ten:A, 6ten:B, 4wvl:A, 7xcr:K, 7xct:K, 7xct:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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