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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
CTSIVAQDSRGHVYHGRNLDYPYGSILRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHKFTVSGDERDRGWWWENL
VAALFLRHSPISWLLRTTLSEAESFEAAVYRLAKTPLIADVYYIVGGTNPREGVVITRNRDGPADIWPLDPLKGVWFLVE
TNYDHWKPAPEEDDRRTPAIKALNATGQAKLSLETLFQVLSVVPVYNNYTIYTTVMSAASPDKYMTRIRNP

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6dy0:B 231 231 1.0000 1.0000 1.0000 2.41e-174 6dxz:B
2 6dxx:B 231 231 0.8831 0.8831 0.8831 4.56e-158 6dxx:D, 6dxx:F
3 6dy2:B 232 231 0.8442 0.8405 0.8442 7.21e-150 6dy2:D
4 6mhm:B 253 246 0.4156 0.3794 0.3902 6.39e-52 6mhm:D
5 5u81:A 369 235 0.3939 0.2466 0.3872 1.78e-47
6 5u84:B 353 244 0.3766 0.2465 0.3566 1.24e-45 5u84:A
7 5gug:A 1721 128 0.1169 0.0157 0.2109 2.1 5gug:B, 1n4k:A, 3t8s:B, 3uj0:A, 3uj0:B, 5xa1:A, 5xa1:B
8 8etk:A 321 45 0.0736 0.0530 0.3778 3.9 8etk:B, 8ewt:A, 8ewt:B, 7svg:A, 7svg:D
9 8qlp:B 452 35 0.0649 0.0332 0.4286 4.7 8qlp:F, 8qlp:J, 8qlp:N
10 8esi:A 316 29 0.0519 0.0380 0.4138 5.4 8esi:B, 8esi:C, 8esi:D, 8esi:E, 8esi:F, 8esi:G, 8esi:H, 8ete:A, 8ete:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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